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TRPS1 transcriptional repressor GATA binding 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 700383, updated on 17-Aug-2024

Summary

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Official Symbol
TRPS1provided by VGNC
Official Full Name
transcriptional repressor GATA binding 1provided by VGNC
Primary source
VGNC:VGNC:78656
See related
Ensembl:ENSMMUG00000003435
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See TRPS1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 8 NC_041761.1 (115683425..115945598, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 8 NC_027900.1 (114594839..114857598, complement)

Chromosome 8 - NC_041761.1Genomic Context describing neighboring genes Neighboring gene erythrocyte band 7 integral membrane protein pseudogene Neighboring gene cytidine monophosphate (UMP-CMP) kinase 1, cytosolic-like Neighboring gene uncharacterized LOC114680434 Neighboring gene lysophosphatidic acid receptor 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger transcription factor Trps1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041761.1 Reference Mmul_10 Primary Assembly

    Range
    115683425..115945598 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015145904.2 → XP_015001390.2  zinc finger transcription factor Trps1 isoform X3

    UniProtKB/TrEMBL
    A0A1D5QV69, A0A1D5QV85, A0A8J8Y2F0, F7F970, G7MZZ7, H9Z2J8
    Related
    ENSMMUP00000051949.2, ENSMMUT00000056916.2
    Conserved Domains (1) summary
    cd00202
    Location:895 → 951
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  2. XM_015145903.2 → XP_015001389.2  zinc finger transcription factor Trps1 isoform X2

    UniProtKB/TrEMBL
    A0A8J8Y2F0, G7MZZ7, H9Z2J8
    Conserved Domains (1) summary
    cd00202
    Location:901 → 957
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  3. XM_015145902.2 → XP_015001388.2  zinc finger transcription factor Trps1 isoform X1

    UniProtKB/TrEMBL
    A0A1D5Q7X5, A0A8J8Y2F0, G7MZZ7, H9Z2J8
    Related
    ENSMMUP00000070620.1, ENSMMUT00000108649.1
    Conserved Domains (1) summary
    cd00202
    Location:908 → 964
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  4. XM_028852875.1 → XP_028708708.1  zinc finger transcription factor Trps1 isoform X3

    UniProtKB/TrEMBL
    A0A1D5QV69, A0A1D5QV85, A0A8J8Y2F0, F7F970, G7MZZ7, H9Z2J8
    Conserved Domains (1) summary
    cd00202
    Location:895 → 951
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

  5. XM_028852874.1 → XP_028708707.1  zinc finger transcription factor Trps1 isoform X1

    UniProtKB/TrEMBL
    A0A1D5Q7X5, A0A8J8Y2F0, G7MZZ7, H9Z2J8
    Related
    ENSMMUP00000067263.1, ENSMMUT00000105184.1
    Conserved Domains (1) summary
    cd00202
    Location:908 → 964
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Nucleotide Protein
Heading Accession and Version

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