COL1A2 collagen type I alpha 2 chain [Macaca mulatta (Rhesus monkey)] - Gene

Summary

Official Symbol: COL1A2provided by VGNC
Official Full Name: collagen type I alpha 2 chainprovided by VGNC
Primary source: VGNC:VGNC:81292
See related: Ensembl:ENSMMUG00000039654
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Macaca mulatta
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 53

Annotation release	Status	Assembly	Chr	Location
103	current	Mmul_10 (GCF_003339765.1)	3	NC_041756.1 (111694892..111731587, complement)
102	previous assembly	Mmul_8.0.1 (GCF_000772875.2)	3	NC_027895.1 (119752170..119788876)

Chromosome 3 - NC_041756.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

COL1A2mfd (e-PCR), detects polymorphism
- UniSTS:164864

D7S2763 (e-PCR)
- UniSTS:28939

SHGC-56152 (e-PCR)
- UniSTS:6679

G20262 (e-PCR)
- UniSTS:27941

A005A20 (e-PCR)
- UniSTS:27942

G59702 (e-PCR)
- UniSTS:137001

COL1A2 (e-PCR)
- UniSTS:15668

COL1A2 (e-PCR)
- UniSTS:479797

COL1A2 (e-PCR)
- UniSTS:279350

GDB:438113 (e-PCR)
- UniSTS:157266

D7S2150E (e-PCR)
- UniSTS:151144

GDB:439267 (e-PCR)
- UniSTS:157291

COL1A2_1224 (e-PCR)
- UniSTS:277114

COL1A2_v348 (e-PCR)
- UniSTS:277114

WI-11486 (e-PCR)
- UniSTS:70022

GDB:365711 (e-PCR)
- UniSTS:156811

GDB:366514 (e-PCR)
- UniSTS:156812

G15893 (e-PCR)
- UniSTS:65936

G44337 (e-PCR)
- UniSTS:95124

GDB:180348 (e-PCR)
- UniSTS:155080

GDB:180350 (e-PCR)
- UniSTS:155082

GDB:1318591 (e-PCR)
- UniSTS:37601

GDB:177260 (e-PCR)
- UniSTS:154850

G44756 (e-PCR)
- UniSTS:95215

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables extracellular matrix structural constituent	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of collagen type I trimer	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: collagen alpha-2(I) chain

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001266337.1 → NP_001253266.1 collagen alpha-2(I) chain precursor

See identical proteins and their annotated locations for NP_001253266.1

Status: PROVISIONAL

Source sequence(s)

JU473293

UniProtKB/TrEMBL

H9Z2D1

Conserved Domains (2) summary

pfam01391
Location:115 → 174

Collagen; Collagen triple helix repeat (20 copies)

pfam01410
Location:1134 → 1365

COLFI; Fibrillar collagen C-terminal domain

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

NC_041756.1 Reference Mmul_10 Primary Assembly

Range

111694892..111731587 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_028844858.1 → XP_028700691.1 collagen alpha-2(I) chain isoform X1

UniProtKB/TrEMBL

A0A1D5R5K5, A0A1D5RKA5

Related

ENSMMUP00000060749.2, ENSMMUT00000066812.2

Conserved Domains (3) summary

pfam01391
Location:23 → 82

Collagen; Collagen triple helix repeat (20 copies)

PRK07764
Location:421 → 597

PRK07764; DNA polymerase III subunits gamma and tau; Validated

pfam01410
Location:1042 → 1273

COLFI; Fibrillar collagen C-terminal domain