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PLEKHF1 pleckstrin homology and FYVE domain containing 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 700343, updated on 17-Aug-2024

Summary

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Official Symbol
PLEKHF1provided by VGNC
Official Full Name
pleckstrin homology and FYVE domain containing 1provided by VGNC
Primary source
VGNC:VGNC:76085
Locus tag
EGK_10407
See related
Ensembl:ENSMMUG00000011373
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See PLEKHF1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 19 NC_041772.1 (29108359..29118562)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 19 NC_027911.1 (25418903..25428906)

Chromosome 19 - NC_041772.1Genomic Context describing neighboring genes Neighboring gene V-set and transmembrane domain containing 2B Neighboring gene POP4 homolog, ribonuclease P/MRP subunit Neighboring gene translation initiation factor IF-2-like Neighboring gene chromosome 19 C19orf12 homolog Neighboring gene uncharacterized LOC114674039

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pleckstrin homology domain-containing family F member 1
Names
pleckstrin homology domain containing, family F (with FYVE domain) member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001193737.2 → NP_001180666.1  pleckstrin homology domain-containing family F member 1

    Status: PROVISIONAL

    Source sequence(s)
    QNVO02000232
    UniProtKB/TrEMBL
    A0A8J8XE23, F6WEV7, G7NLE7
    Related
    ENSMMUP00000014924.1, ENSMMUT00000015925.3
    Conserved Domains (2) summary
    cd01218
    Location:7 → 129
    PH_Phafin2-like; Phafin2 (also called EAPF, FLJ13187, ZFYVE18 or PLEKHF2) Pleckstrin Homology (PH) domain
    cd15754
    Location:148 → 211
    FYVE_PKHF1; FYVE domain found in protein containing both PH and FYVE domains 1 (phafin-1) and similar proteins

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041772.1 Reference Mmul_10 Primary Assembly

    Range
    29108359..29118562
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028838365.1 → XP_028694198.1  pleckstrin homology domain-containing family F member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8J8XE23, F6WEV7, G7NLE7
    Related
    ENSMMUP00000065385.1, ENSMMUT00000092049.1
    Conserved Domains (2) summary
    cd01218
    Location:7 → 129
    PH_Phafin2-like; Phafin2 (also called EAPF, FLJ13187, ZFYVE18 or PLEKHF2) Pleckstrin Homology (PH) domain
    cd15754
    Location:148 → 211
    FYVE_PKHF1; FYVE domain found in protein containing both PH and FYVE domains 1 (phafin-1) and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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