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TM6SF1 transmembrane 6 superfamily member 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 700147, updated on 17-Aug-2024

Summary

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Official Symbol
TM6SF1provided by VGNC
Official Full Name
transmembrane 6 superfamily member 1provided by VGNC
Primary source
VGNC:VGNC:78566
See related
Ensembl:ENSMMUG00000009084
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See TM6SF1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
16
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (62546725..62602530, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (61464788..61493773)

Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene SH3 domain containing GRB2 like 3, endophilin A3 Neighboring gene basonuclin zinc finger protein 1 Neighboring gene HDGF like 3 Neighboring gene U7 small nuclear RNA Neighboring gene fatty acid-binding protein 5 pseudogene Neighboring gene BTB domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane 6 superfamily member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041760.1 Reference Mmul_10 Primary Assembly

    Range
    62546725..62602530 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028851248.1 → XP_028707081.1  transmembrane 6 superfamily member 1 isoform X2

    Conserved Domains (1) summary
    pfam10914
    Location:217 → 313
    DUF2781; Protein of unknown function (DUF2781)

  2. XM_028851250.1 → XP_028707083.1  transmembrane 6 superfamily member 1 isoform X4

    Conserved Domains (1) summary
    pfam10914
    Location:202 → 298
    DUF2781; Protein of unknown function (DUF2781)

  3. XM_028851246.1 → XP_028707079.1  transmembrane 6 superfamily member 1 isoform X1

    Conserved Domains (1) summary
    pfam10914
    Location:221 → 317
    DUF2781; Protein of unknown function (DUF2781)

  4. XM_028851256.1 → XP_028707089.1  transmembrane 6 superfamily member 1 isoform X11

    Conserved Domains (1) summary
    cl12494
    Location:4 → 161
    TM6SF1-like; transmembrane 6 superfamily member 1, member 2, and similar proteins

  5. XM_015142888.2 → XP_014998374.1  transmembrane 6 superfamily member 1 isoform X7

    UniProtKB/TrEMBL
    G7MYP4
    Conserved Domains (1) summary
    cd21106
    Location:6 → 329
    TM6SF1-like; transmembrane 6 superfamily member 1, member 2, and similar proteins

  6. XM_015142885.2 → XP_014998371.1  transmembrane 6 superfamily member 1 isoform X5

    UniProtKB/TrEMBL
    F7H8Q4, G7MYP4, H9EQ46
    Related
    ENSMMUP00000039832.3, ENSMMUT00000046803.3
    Conserved Domains (1) summary
    cd21106
    Location:6 → 360
    TM6SF1-like; transmembrane 6 superfamily member 1, member 2, and similar proteins

  7. XM_028851255.1 → XP_028707088.1  transmembrane 6 superfamily member 1 isoform X10

    Conserved Domains (1) summary
    cd21106
    Location:1 → 212
    TM6SF1-like; transmembrane 6 superfamily member 1, member 2, and similar proteins

  8. XM_028851249.1 → XP_028707082.1  transmembrane 6 superfamily member 1 isoform X3

    UniProtKB/TrEMBL
    F7H8Q1, G7MYP4
    Related
    ENSMMUP00000039833.3, ENSMMUT00000046804.3
    Conserved Domains (1) summary
    cd21106
    Location:42 → 370
    TM6SF1-like; transmembrane 6 superfamily member 1, member 2, and similar proteins

  9. XM_028851251.1 → XP_028707084.1  transmembrane 6 superfamily member 1 isoform X6

    UniProtKB/TrEMBL
    G7MYP4
    Conserved Domains (1) summary
    pfam10914
    Location:243 → 332
    DUF2781; Protein of unknown function (DUF2781)

  10. XM_028851254.1 → XP_028707087.1  transmembrane 6 superfamily member 1 isoform X9

    Conserved Domains (1) summary
    pfam10914
    Location:23 → 159
    DUF2781; Protein of unknown function (DUF2781)

  11. XM_028851257.1 → XP_028707090.1  transmembrane 6 superfamily member 1 isoform X12

    Conserved Domains (1) summary
    cl12494
    Location:6 → 160
    TM6SF1-like; transmembrane 6 superfamily member 1, member 2, and similar proteins

  12. XM_028851253.1 → XP_028707086.1  transmembrane 6 superfamily member 1 isoform X8

  13. XM_028851252.1 → XP_028707085.1  transmembrane 6 superfamily member 1 isoform X8

Nucleotide Protein
Heading Accession and Version

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