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SGCE sarcoglycan epsilon [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 700104, updated on 17-Aug-2024

Summary

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Official Symbol
SGCEprovided by VGNC
Official Full Name
sarcoglycan epsilonprovided by VGNC
Primary source
VGNC:VGNC:77193
See related
Ensembl:ENSMMUG00000016394
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SGCE in Genome Data Viewer
Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (111475436..111546998)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (119936252..120007803, complement)

Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene ATP synthase F(0) complex subunit B1, mitochondrial pseudogene Neighboring gene paternally expressed 10 Neighboring gene CAS1 domain containing 1 Neighboring gene U6 spliceosomal RNA Neighboring gene collagen type I alpha 2 chain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
epsilon-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041756.1 Reference Mmul_10 Primary Assembly

    Range
    111475436..111546998
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001096667.3 → XP_001096667.1  epsilon-sarcoglycan isoform X10

    See identical proteins and their annotated locations for XP_001096667.1

    UniProtKB/TrEMBL
    F7G226
    Conserved Domains (1) summary
    pfam05510
    Location:34 → 409
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_028846054.1 → XP_028701887.1  epsilon-sarcoglycan isoform X12

    UniProtKB/TrEMBL
    G7MLV3
    Conserved Domains (1) summary
    pfam05510
    Location:8 → 390
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  3. XM_028846055.1 → XP_028701888.1  epsilon-sarcoglycan isoform X14

    UniProtKB/TrEMBL
    A0A5F8A4P3
    Conserved Domains (1) summary
    pfam05510
    Location:1 → 328
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  4. XM_028846056.1 → XP_028701889.1  epsilon-sarcoglycan isoform X15

    UniProtKB/TrEMBL
    A0A5F8A4P3
    Conserved Domains (1) summary
    pfam05510
    Location:1 → 319
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  5. XM_015134276.2 → XP_014989762.1  epsilon-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0A5F8AF12
    Conserved Domains (1) summary
    pfam05510
    Location:73 → 454
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  6. XM_015134277.2 → XP_014989763.1  epsilon-sarcoglycan isoform X4

    UniProtKB/TrEMBL
    A0A5F7ZVW5, A0A5F8AF12
    Related
    ENSMMUP00000068767.1, ENSMMUT00000085974.1
    Conserved Domains (1) summary
    pfam05510
    Location:73 → 446
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  7. XM_015134278.1 → XP_014989764.1  epsilon-sarcoglycan isoform X5

    UniProtKB/TrEMBL
    F7G226, H9G1E8
    Conserved Domains (1) summary
    pfam05510
    Location:34 → 418
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  8. XM_015134280.1 → XP_014989766.1  epsilon-sarcoglycan isoform X7

    UniProtKB/TrEMBL
    G7MLV3, I0FW55
    Related
    ENSMMUP00000021530.4, ENSMMUT00000023018.4
    Conserved Domains (1) summary
    pfam05510
    Location:34 → 418
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  9. XM_001096777.2 → XP_001096777.1  epsilon-sarcoglycan isoform X9

    See identical proteins and their annotated locations for XP_001096777.1

    UniProtKB/TrEMBL
    A0A5F7ZTG4, G7MLV3
    Related
    ENSMMUP00000067937.1, ENSMMUT00000080568.1
    Conserved Domains (1) summary
    pfam05510
    Location:34 → 410
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  10. XM_028846052.1 → XP_028701885.1  epsilon-sarcoglycan isoform X11

    UniProtKB/TrEMBL
    A0A5F7ZTG4, G7MLV3
    Conserved Domains (1) summary
    pfam05510
    Location:34 → 409
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  11. XM_015134273.1 → XP_014989759.1  epsilon-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A5F8AF12
    Conserved Domains (1) summary
    pfam05510
    Location:73 → 454
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  12. XM_028846050.1 → XP_028701883.1  epsilon-sarcoglycan isoform X6

    UniProtKB/TrEMBL
    A0A1D5QIX0, G7MLV3
    Related
    ENSMMUP00000047992.2, ENSMMUT00000059361.2
    Conserved Domains (1) summary
    pfam05510
    Location:73 → 454
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  13. XM_015134275.1 → XP_014989761.1  epsilon-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A5F8AF12
    Conserved Domains (1) summary
    pfam05510
    Location:73 → 445
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  14. XM_015134282.1 → XP_014989768.1  epsilon-sarcoglycan isoform X13

    UniProtKB/TrEMBL
    A0A5F8A4P3
    Related
    ENSMMUP00000072860.1, ENSMMUT00000082175.1
    Conserved Domains (1) summary
    pfam05510
    Location:1 → 328
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  15. XM_028846053.1 → XP_028701886.1  epsilon-sarcoglycan isoform X12

    UniProtKB/TrEMBL
    G7MLV3
    Conserved Domains (1) summary
    pfam05510
    Location:8 → 390
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  16. XM_028846051.1 → XP_028701884.1  epsilon-sarcoglycan isoform X8

    UniProtKB/TrEMBL
    A0A5F8A4P3
    Conserved Domains (1) summary
    pfam05510
    Location:8 → 390
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

RNA

  1. XR_003728259.1 RNA Sequence

  2. XR_003728258.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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