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TRIM54 tripartite motif containing 54 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 699826, updated on 17-Aug-2024

Summary

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Official Symbol
TRIM54provided by VGNC
Official Full Name
tripartite motif containing 54provided by VGNC
Primary source
VGNC:VGNC:79003
Locus tag
EGK_05160
See related
Ensembl:ENSMMUG00000010507
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See TRIM54 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 13 NC_041766.1 (81644544..81670118, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 13 NC_027905.1 (27576571..27601440)

Chromosome 13 - NC_041766.1Genomic Context describing neighboring genes Neighboring gene general transcription factor IIIC subunit 2 Neighboring gene mitochondrial inner membrane protein MPV17 Neighboring gene urocortin Neighboring gene DnaJ heat shock protein family (Hsp40) member C5 gamma Neighboring gene solute carrier family 30 member 3 Neighboring gene carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tripartite motif-containing protein 54

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001266026.1 → NP_001252955.1  tripartite motif-containing protein 54

    See identical proteins and their annotated locations for NP_001252955.1

    Status: PROVISIONAL

    Source sequence(s)
    JV636284
    UniProtKB/TrEMBL
    A0A1D5Q6D6, A0A8J8XU71, F7B8H2, F7E925, G7N9N5
    Related
    ENSMMUP00000013771.4, ENSMMUT00000014701.4
    Conserved Domains (2) summary
    cd16761
    Location:24 → 82
    RING-HC_MuRF3; RING finger, HC subclass, found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins
    cd19833
    Location:124 → 166
    Bbox2_MuRF3_C-II; B-box-type 2 zinc finger found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041766.1 Reference Mmul_10 Primary Assembly

    Range
    81644544..81670118 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015111907.2 → XP_014967393.1  tripartite motif-containing protein 54 isoform X1

    UniProtKB/TrEMBL
    F7E925
    Conserved Domains (2) summary
    cd16761
    Location:24 → 82
    RING-HC_MuRF3; RING finger, HC subclass, found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins
    cd19833
    Location:124 → 166
    Bbox2_MuRF3_C-II; B-box-type 2 zinc finger found in muscle-specific RING finger protein 3 (MuRF-3) and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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