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PUF60 poly(U) binding splicing factor 60 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 699008, updated on 17-Aug-2024

Summary

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Official Symbol
PUF60provided by VGNC
Official Full Name
poly(U) binding splicing factor 60provided by VGNC
Primary source
VGNC:VGNC:84106
See related
Ensembl:ENSMMUG00000013558
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See PUF60 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
13
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 8 NC_041761.1 (144079572..144095659, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 8 NC_027900.1 (143081817..143095380, complement)

Chromosome 8 - NC_041761.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106999989 Neighboring gene microRNA mir-937 Neighboring gene nuclear receptor binding protein 2 Neighboring gene epiplakin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
poly(U)-binding-splicing factor PUF60
Names
poly-U binding splicing factor 60KDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041761.1 Reference Mmul_10 Primary Assembly

    Range
    144079572..144095659 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015146163.2 → XP_015001649.1  poly(U)-binding-splicing factor PUF60 isoform X3

    UniProtKB/TrEMBL
    G7N098, H9Z6F0
    Conserved Domains (4) summary
    TIGR01645
    Location:7 → 543
    half-pint; poly-U binding splicing factor, half-pint family
    cd12370
    Location:113 → 188
    RRM1_PUF60; RNA recognition motif 1 in (U)-binding-splicing factor PUF60 and similar proteins
    cd12371
    Location:210 → 286
    RRM2_PUF60; RNA recognition motif 2 in (U)-binding-splicing factor PUF60 and similar proteins
    cd12648
    Location:445 → 542
    RRM3_UHM_PUF60; RNA recognition motif 3 in UHM domain of poly(U)-binding-splicing factor PUF60 and similar proteins

  2. XM_015146158.2 → XP_015001644.1  poly(U)-binding-splicing factor PUF60 isoform X1

    UniProtKB/TrEMBL
    A0A1D5QFJ8, H9FRE7
    Related
    ENSMMUP00000071378.1, ENSMMUT00000093710.1
    Conserved Domains (5) summary
    TIGR01645
    Location:7 → 560
    half-pint; poly-U binding splicing factor, half-pint family
    cd12370
    Location:130 → 205
    RRM1_PUF60; RNA recognition motif 1 in (U)-binding-splicing factor PUF60 and similar proteins
    cd12371
    Location:227 → 303
    RRM2_PUF60; RNA recognition motif 2 in (U)-binding-splicing factor PUF60 and similar proteins
    cd12648
    Location:462 → 559
    RRM3_UHM_PUF60; RNA recognition motif 3 in UHM domain of poly(U)-binding-splicing factor PUF60 and similar proteins
    cl21455
    Location:63 → 154
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  3. XM_001087851.4 → XP_001087851.2  poly(U)-binding-splicing factor PUF60 isoform X4

    UniProtKB/TrEMBL
    G7N098
    Conserved Domains (4) summary
    TIGR01645
    Location:9 → 542
    half-pint; poly-U binding splicing factor, half-pint family
    cd12370
    Location:112 → 187
    RRM1_PUF60; RNA recognition motif 1 in (U)-binding-splicing factor PUF60 and similar proteins
    cd12371
    Location:209 → 285
    RRM2_PUF60; RNA recognition motif 2 in (U)-binding-splicing factor PUF60 and similar proteins
    cd12648
    Location:444 → 541
    RRM3_UHM_PUF60; RNA recognition motif 3 in UHM domain of poly(U)-binding-splicing factor PUF60 and similar proteins

  4. XM_001087975.4 → XP_001087975.2  poly(U)-binding-splicing factor PUF60 isoform X2

    UniProtKB/TrEMBL
    A0A1D5QFJ8
    Related
    ENSMMUP00000031872.3, ENSMMUT00000038793.3
    Conserved Domains (5) summary
    TIGR01645
    Location:9 → 559
    half-pint; poly-U binding splicing factor, half-pint family
    cd12370
    Location:129 → 204
    RRM1_PUF60; RNA recognition motif 1 in (U)-binding-splicing factor PUF60 and similar proteins
    cd12371
    Location:226 → 302
    RRM2_PUF60; RNA recognition motif 2 in (U)-binding-splicing factor PUF60 and similar proteins
    cd12648
    Location:461 → 558
    RRM3_UHM_PUF60; RNA recognition motif 3 in UHM domain of poly(U)-binding-splicing factor PUF60 and similar proteins
    cl21455
    Location:62 → 153
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  5. XM_028853089.1 → XP_028708922.1  poly(U)-binding-splicing factor PUF60 isoform X6

    UniProtKB/TrEMBL
    A0A5F8AQ00, G7N098
    Related
    ENSMMUP00000069454.1, ENSMMUT00000091829.1
    Conserved Domains (1) summary
    TIGR01645
    Location:1 → 499
    half-pint; poly-U binding splicing factor, half-pint family

  6. XM_015146160.2 → XP_015001646.1  poly(U)-binding-splicing factor PUF60 isoform X5

    UniProtKB/TrEMBL
    A0A1D5Q637, A0A1D5QFJ8, A0A1D5QV23, F7FN20, F7FN25
    Related
    ENSMMUP00000051903.2, ENSMMUT00000077082.2
    Conserved Domains (1) summary
    TIGR01645
    Location:1 → 516
    half-pint; poly-U binding splicing factor, half-pint family
Nucleotide Protein
Heading Accession and Version

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