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TAF1 TATA-box binding protein associated factor 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 698800, updated on 17-Aug-2024

Summary

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Official Symbol
TAF1provided by VGNC
Official Full Name
TATA-box binding protein associated factor 1provided by VGNC
Primary source
VGNC:VGNC:97834
See related
Ensembl:ENSMMUG00000005663
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See TAF1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
40
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) X NC_041774.1 (68359459..68457469)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) X NC_027913.1 (66100856..66199461)

Chromosome X - NC_041774.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCHC-type and RNA-binding motif-containing protein 1-like Neighboring gene RHOG family member 2, pseudogene Neighboring gene polyadenylate-binding protein 2 pseudogene Neighboring gene small nucleolar RNA U13 Neighboring gene keratin, type II cytoskeletal 8 pseudogene Neighboring gene inhibitor of growth protein 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II general transcription initiation factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables TBP-class protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in RNA polymerase II preinitiation complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor TFIID subunit 1
Names
TBP-associated factor 1
transcription initiation factor TFIID subunit 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041774.1 Reference Mmul_10 Primary Assembly

    Range
    68359459..68457469
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028842258.1 → XP_028698091.1  transcription initiation factor TFIID subunit 1 isoform X4

    UniProtKB/TrEMBL
    G7N6Q7
    Conserved Domains (6) summary
    cd05511
    Location:1507 → 1619
    Bromo_TFIID; Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to ...
    pfam04147
    Location:1691 → 1796
    Nop14; Nop14-like family
    pfam09247
    Location:29 → 86
    TBP-binding; TATA box-binding protein binding
    pfam12157
    Location:565 → 1028
    DUF3591; Protein of unknown function (DUF3591)
    pfam14797
    Location:1755 → 1846
    SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex
    pfam15288
    Location:1261 → 1296
    zf-CCHC_6; Zinc knuckle

  2. XM_028842255.1 → XP_028698088.1  transcription initiation factor TFIID subunit 1 isoform X1

    UniProtKB/TrEMBL
    G7N6Q7
    Conserved Domains (6) summary
    cd05511
    Location:1528 → 1640
    Bromo_TFIID; Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to ...
    PHA03169
    Location:1665 → 1899
    PHA03169; hypothetical protein; Provisional
    pfam04147
    Location:1712 → 1817
    Nop14; Nop14-like family
    pfam09247
    Location:29 → 86
    TBP-binding; TATA box-binding protein binding
    pfam12157
    Location:586 → 1049
    DUF3591; Protein of unknown function (DUF3591)
    pfam15288
    Location:1282 → 1317
    zf-CCHC_6; Zinc knuckle

  3. XM_028842256.1 → XP_028698089.1  transcription initiation factor TFIID subunit 1 isoform X2

    UniProtKB/TrEMBL
    G7N6Q7
    Conserved Domains (6) summary
    cd05511
    Location:1527 → 1639
    Bromo_TFIID; Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to ...
    PHA03169
    Location:1664 → 1898
    PHA03169; hypothetical protein; Provisional
    pfam04147
    Location:1711 → 1816
    Nop14; Nop14-like family
    pfam09247
    Location:29 → 86
    TBP-binding; TATA box-binding protein binding
    pfam12157
    Location:586 → 1049
    DUF3591; Protein of unknown function (DUF3591)
    pfam15288
    Location:1281 → 1316
    zf-CCHC_6; Zinc knuckle

  4. XM_028842259.1 → XP_028698092.1  transcription initiation factor TFIID subunit 1 isoform X5

    UniProtKB/TrEMBL
    F6VX35, G7N6Q7
    Related
    ENSMMUP00000007484.4, ENSMMUT00000007963.4
    Conserved Domains (5) summary
    cd05511
    Location:1528 → 1640
    Bromo_TFIID; Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to ...
    pfam09247
    Location:29 → 86
    TBP-binding; TATA box-binding protein binding
    pfam12157
    Location:586 → 1049
    DUF3591; Protein of unknown function (DUF3591)
    pfam14797
    Location:1742 → 1833
    SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex
    pfam15288
    Location:1282 → 1317
    zf-CCHC_6; Zinc knuckle

  5. XM_028842260.1 → XP_028698093.1  transcription initiation factor TFIID subunit 1 isoform X6

    UniProtKB/TrEMBL
    F6UC59, G7N6Q7, H9EUL2
    Related
    ENSMMUP00000040985.3, ENSMMUT00000047948.3
    Conserved Domains (5) summary
    cd05511
    Location:1528 → 1640
    Bromo_TFIID; Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to ...
    pfam09247
    Location:29 → 86
    TBP-binding; TATA box-binding protein binding
    pfam12157
    Location:586 → 1049
    DUF3591; Protein of unknown function (DUF3591)
    pfam14797
    Location:1740 → 1831
    SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex
    pfam15288
    Location:1282 → 1317
    zf-CCHC_6; Zinc knuckle

  6. XM_028842261.1 → XP_028698094.1  transcription initiation factor TFIID subunit 1 isoform X7

    UniProtKB/TrEMBL
    G7N6Q7, H9Z1X9
    Conserved Domains (5) summary
    cd05511
    Location:1507 → 1619
    Bromo_TFIID; Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to ...
    pfam09247
    Location:29 → 86
    TBP-binding; TATA box-binding protein binding
    pfam12157
    Location:565 → 1028
    DUF3591; Protein of unknown function (DUF3591)
    pfam14797
    Location:1719 → 1810
    SEEEED; Serine-rich region of AP3B1, clathrin-adaptor complex
    pfam15288
    Location:1261 → 1296
    zf-CCHC_6; Zinc knuckle

  7. XM_028842257.1 → XP_028698090.1  transcription initiation factor TFIID subunit 1 isoform X3

    UniProtKB/TrEMBL
    G7N6Q7, H9FQ38
    Related
    ENSMMUP00000076743.1, ENSMMUT00000107227.1
    Conserved Domains (6) summary
    cd05511
    Location:1528 → 1640
    Bromo_TFIID; Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to ...
    PHA03169
    Location:1665 → 1897
    PHA03169; hypothetical protein; Provisional
    pfam04147
    Location:1710 → 1815
    Nop14; Nop14-like family
    pfam09247
    Location:29 → 86
    TBP-binding; TATA box-binding protein binding
    pfam12157
    Location:586 → 1049
    DUF3591; Protein of unknown function (DUF3591)
    pfam15288
    Location:1282 → 1317
    zf-CCHC_6; Zinc knuckle
Nucleotide Protein
Heading Accession and Version

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