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CTDP1 CTD phosphatase subunit 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 698467, updated on 17-Aug-2024

Summary

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Official Symbol
CTDP1provided by VGNC
Official Full Name
CTD phosphatase subunit 1provided by VGNC
Primary source
VGNC:VGNC:71541
See related
Ensembl:ENSMMUG00000009151
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See CTDP1 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
14
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 18 NC_041771.1 (499948..574126, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 18 NC_027910.1 (69682632..69757681)

Chromosome 18 - NC_041771.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 66 member 2 Neighboring gene potassium voltage-gated channel modifier subfamily G member 2 Neighboring gene uncharacterized LOC106994590 Neighboring gene 60S ribosomal protein L7a-like Neighboring gene nuclear factor of activated T cells 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II CTD heptapeptide repeat phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA polymerase II subunit A C-terminal domain phosphatase
Names
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1
XP_001088601.1
XP_014977726.1
XP_014977727.2
XP_028693964.1
XP_028693965.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041771.1 Reference Mmul_10 Primary Assembly

    Range
    499948..574126 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015122241.2 → XP_014977727.2  RNA polymerase II subunit A C-terminal domain phosphatase isoform X3

    UniProtKB/TrEMBL
    G7NKA9
    Conserved Domains (5) summary
    TIGR02250
    Location:177 → 323
    FCP1_euk; FCP1-like phosphatase, phosphatase domain
    PRK07764
    Location:332 → 530
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam09309
    Location:721 → 809
    FCP1_C; FCP1, C-terminal
    cd17729
    Location:626 → 728
    BRCT_CTDP1; BRCT domain of RNA polymerase II subunit A C-terminal domain phosphatase (CTDP1) and similar proteins
    cl11404
    Location:88 → 111
    Biotinyl_lipoyl_domains; Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, ...

  2. XM_001088601.4 → XP_001088601.1  RNA polymerase II subunit A C-terminal domain phosphatase isoform X1

    UniProtKB/TrEMBL
    F7E4V3
    Related
    ENSMMUP00000011999.4, ENSMMUT00000012797.4
    Conserved Domains (4) summary
    TIGR02250
    Location:177 → 323
    FCP1_euk; FCP1-like phosphatase, phosphatase domain
    cd00027
    Location:641 → 721
    BRCT; Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo ...
    pfam09309
    Location:721 → 964
    FCP1_C; FCP1, C-terminal
    cl11404
    Location:88 → 111
    Biotinyl_lipoyl_domains; Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, ...

  3. XM_028838132.1 → XP_028693965.1  RNA polymerase II subunit A C-terminal domain phosphatase isoform X5

    UniProtKB/TrEMBL
    G7NKA9
    Conserved Domains (4) summary
    TIGR02250
    Location:58 → 204
    FCP1_euk; FCP1-like phosphatase, phosphatase domain
    PRK07764
    Location:213 → 411
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam09309
    Location:602 → 845
    FCP1_C; FCP1, C-terminal
    cd17729
    Location:507 → 609
    BRCT_CTDP1; BRCT domain of RNA polymerase II subunit A C-terminal domain phosphatase (CTDP1) and similar proteins

  4. XM_028838131.1 → XP_028693964.1  RNA polymerase II subunit A C-terminal domain phosphatase isoform X4

    UniProtKB/TrEMBL
    G7NKA9
    Conserved Domains (4) summary
    TIGR02250
    Location:75 → 221
    FCP1_euk; FCP1-like phosphatase, phosphatase domain
    PRK07764
    Location:230 → 428
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam09309
    Location:619 → 862
    FCP1_C; FCP1, C-terminal
    cd17729
    Location:524 → 626
    BRCT_CTDP1; BRCT domain of RNA polymerase II subunit A C-terminal domain phosphatase (CTDP1) and similar proteins

  5. XM_015122240.2 → XP_014977726.1  RNA polymerase II subunit A C-terminal domain phosphatase isoform X2

    UniProtKB/TrEMBL
    F7E4V3
    Conserved Domains (4) summary
    TIGR02250
    Location:177 → 323
    FCP1_euk; FCP1-like phosphatase, phosphatase domain
    cd00027
    Location:635 → 715
    BRCT; Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo ...
    pfam09309
    Location:715 → 958
    FCP1_C; FCP1, C-terminal
    cl11404
    Location:88 → 111
    Biotinyl_lipoyl_domains; Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, ...

RNA

  1. XR_003724643.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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