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BTAF1 B-TFIID TATA-box binding protein associated factor 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 698008, updated on 17-Aug-2024

Summary

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Official Symbol
BTAF1provided by VGNC
Official Full Name
B-TFIID TATA-box binding protein associated factor 1provided by VGNC
Primary source
VGNC:VGNC:70336
See related
Ensembl:ENSMMUG00000017627
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See BTAF1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
39
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (92087389..92193905)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (87144845..87251681)

Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114670003 Neighboring gene fibroblast growth factor binding protein 3 Neighboring gene cytoplasmic polyadenylation element binding protein 3 Neighboring gene succinate dehydrogenase cytochrome b560 subunit, mitochondrial pseudogene Neighboring gene eukaryotic initiation factor 4A-I-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables TBP-class protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TATA-binding protein-associated factor 172
Names
BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041762.1 Reference Mmul_10 Primary Assembly

    Range
    92087389..92193905
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015147682.2 → XP_015003168.2  TATA-binding protein-associated factor 172 isoform X1

    UniProtKB/TrEMBL
    A0A1D5Q9F4, A0A5K1UK39
    Related
    ENSMMUP00000023195.4, ENSMMUT00000024785.4
    Conserved Domains (5) summary
    COG0553
    Location:1236 → 1801
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    sd00044
    Location:352 → 377
    HEAT; HEAT repeat [structural motif]
    pfam12054
    Location:594 → 1051
    DUF3535; Domain of unknown function (DUF3535)
    pfam13513
    Location:403 → 454
    HEAT_EZ; HEAT-like repeat
    cd17999
    Location:1266 → 1503
    DEXHc_Mot1; DEXH-box helicase domain of Mot1

  2. XM_015147684.2 → XP_015003170.2  TATA-binding protein-associated factor 172 isoform X3

    UniProtKB/TrEMBL
    A0A1D5Q9F4
    Related
    ENSMMUP00000044672.2, ENSMMUT00000063487.2
    Conserved Domains (5) summary
    COG0553
    Location:1199 → 1764
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    COG1413
    Location:259 → 554
    HEAT; HEAT repeat [General function prediction only]
    sd00044
    Location:352 → 377
    HEAT; HEAT repeat [structural motif]
    pfam12054
    Location:557 → 1014
    DUF3535; Domain of unknown function (DUF3535)
    cd17999
    Location:1229 → 1466
    DEXHc_Mot1; DEXH-box helicase domain of Mot1

  3. XM_015147683.2 → XP_015003169.2  TATA-binding protein-associated factor 172 isoform X2

    UniProtKB/TrEMBL
    A0A1D5Q9F4, A0A5F7ZK80
    Related
    ENSMMUP00000065588.1, ENSMMUT00000098963.1
    Conserved Domains (5) summary
    COG0553
    Location:1213 → 1778
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    sd00044
    Location:329 → 354
    HEAT; HEAT repeat [structural motif]
    pfam12054
    Location:571 → 1028
    DUF3535; Domain of unknown function (DUF3535)
    pfam13513
    Location:380 → 431
    HEAT_EZ; HEAT-like repeat
    cd17999
    Location:1243 → 1480
    DEXHc_Mot1; DEXH-box helicase domain of Mot1

  4. XM_015147685.2 → XP_015003171.1  TATA-binding protein-associated factor 172 isoform X5

    UniProtKB/TrEMBL
    A0A1D5Q9F4
    Conserved Domains (6) summary
    cd00046
    Location:956 → 1105
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:939 → 1255
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:1314 → 1414
    Helicase_C; Helicase conserved C-terminal domain
    pfam12054
    Location:256 → 721
    DUF3535; Domain of unknown function (DUF3535)
    pfam13513
    Location:73 → 124
    HEAT_EZ; HEAT-like repeat
    sd00044
    Location:22 → 47
    HEAT; HEAT repeat [structural motif]

  5. XM_028826656.1 → XP_028682489.1  TATA-binding protein-associated factor 172 isoform X4

    UniProtKB/TrEMBL
    A0A1D5Q9F4
    Conserved Domains (5) summary
    COG0553
    Location:1145 → 1710
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    sd00044
    Location:261 → 286
    HEAT; HEAT repeat [structural motif]
    pfam12054
    Location:503 → 960
    DUF3535; Domain of unknown function (DUF3535)
    pfam13513
    Location:312 → 363
    HEAT_EZ; HEAT-like repeat
    cd17999
    Location:1175 → 1412
    DEXHc_Mot1; DEXH-box helicase domain of Mot1
Nucleotide Protein
Heading Accession and Version

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