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FOXA1 forkhead box A1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 697909, updated on 17-Aug-2024

Summary

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Official Symbol
FOXA1provided by VGNC
Official Full Name
forkhead box A1provided by VGNC
Primary source
VGNC:VGNC:72707
See related
Ensembl:ENSMMUG00000056013
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See FOXA1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (99693018..99698771, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (99067531..99075936, complement)

Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene mirror-image polydactyly 1 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC114679552 Neighboring gene tetratricopeptide repeat domain 6 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein domain specific binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hepatocyte nuclear factor 3-alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041760.1 Reference Mmul_10 Primary Assembly

    Range
    99693018..99698771 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015143596.2 → XP_014999082.1  hepatocyte nuclear factor 3-alpha

    UniProtKB/TrEMBL
    A0A5F8A155
    Related
    ENSMMUP00000071089.1, ENSMMUT00000088493.1
    Conserved Domains (3) summary
    smart00339
    Location:170 → 258
    FH; FORKHEAD
    pfam08430
    Location:17 → 169
    Forkhead_N; Forkhead N-terminal region
    pfam09354
    Location:396 → 459
    HNF_C; HNF3 C-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials