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SOX6 SRY-box transcription factor 6 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 697831, updated on 17-Aug-2024

Summary

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Official Symbol
SOX6provided by VGNC
Official Full Name
SRY-box transcription factor 6provided by VGNC
Primary source
VGNC:VGNC:77931
See related
Ensembl:ENSMMUG00000002753
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SOX6 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
30
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (49011566..49673718)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (49821379..50481887)

Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114672318 Neighboring gene chromosome 14 C11orf58 homolog Neighboring gene uncharacterized LOC106993327 Neighboring gene aldose reductase pseudogene Neighboring gene uncharacterized LOC114672136 Neighboring gene uncharacterized LOC100425978

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of chondrocyte differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SOX-6
Names
SRY (sex determining region Y)-box 6
SRY-box 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041767.1 Reference Mmul_10 Primary Assembly

    Range
    49011566..49673718
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015114803.2 → XP_014970289.1  transcription factor SOX-6 isoform X16

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:600 → 671
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

  2. XM_015114789.2 → XP_014970275.1  transcription factor SOX-6 isoform X8

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:635 → 706
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  3. XM_015114788.2 → XP_014970274.1  transcription factor SOX-6 isoform X8

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:635 → 706
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  4. XM_028833622.1 → XP_028689455.1  transcription factor SOX-6 isoform X8

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:635 → 706
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  5. XM_015114793.2 → XP_014970279.1  transcription factor SOX-6 isoform X8

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:635 → 706
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  6. XM_028833619.1 → XP_028689452.1  transcription factor SOX-6 isoform X8

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:635 → 706
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  7. XM_028833623.1 → XP_028689456.1  transcription factor SOX-6 isoform X8

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:635 → 706
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  8. XM_028833621.1 → XP_028689454.1  transcription factor SOX-6 isoform X8

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:635 → 706
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  9. XM_028833620.1 → XP_028689453.1  transcription factor SOX-6 isoform X8

    UniProtKB/TrEMBL
    F7H4A5
    Related
    ENSMMUP00000003700.3, ENSMMUT00000003916.4
    Conserved Domains (1) summary
    cd01388
    Location:635 → 706
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  10. XM_015114786.2 → XP_014970272.1  transcription factor SOX-6 isoform X7

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:638 → 709
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

  11. XM_001090887.4 → XP_001090887.1  transcription factor SOX-6 isoform X18

    See identical proteins and their annotated locations for XP_001090887.1

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:596 → 667
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  12. XM_015114794.2 → XP_014970280.1  transcription factor SOX-6 isoform X8

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:635 → 706
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  13. XM_015114792.2 → XP_014970278.1  transcription factor SOX-6 isoform X8

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:635 → 706
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  14. XM_015114795.2 → XP_014970281.1  transcription factor SOX-6 isoform X8

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:635 → 706
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  15. XM_015114784.2 → XP_014970270.1  transcription factor SOX-6 isoform X5

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:647 → 718
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

  16. XM_028833626.1 → XP_028689459.1  transcription factor SOX-6 isoform X19

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:628 → 699
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  17. XM_015114785.2 → XP_014970271.1  transcription factor SOX-6 isoform X6

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:642 → 713
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

  18. XM_015114780.2 → XP_014970266.1  transcription factor SOX-6 isoform X1

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:662 → 733
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

  19. XM_028833618.1 → XP_028689451.1  transcription factor SOX-6 isoform X3

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:661 → 732
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  20. XM_015114781.2 → XP_014970267.1  transcription factor SOX-6 isoform X2

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:661 → 732
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

  21. XM_015114797.2 → XP_014970283.1  transcription factor SOX-6 isoform X9

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:627 → 698
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

  22. XM_015114783.2 → XP_014970269.1  transcription factor SOX-6 isoform X4

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:648 → 719
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

  23. XM_028833624.1 → XP_028689457.1  transcription factor SOX-6 isoform X12

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:620 → 691
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  24. XM_015114799.2 → XP_014970285.1  transcription factor SOX-6 isoform X11

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:620 → 691
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

  25. XM_015114801.2 → XP_014970287.1  transcription factor SOX-6 isoform X14

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:606 → 677
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  26. XM_015114798.2 → XP_014970284.1  transcription factor SOX-6 isoform X10

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:621 → 692
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

  27. XM_015114800.2 → XP_014970286.1  transcription factor SOX-6 isoform X13

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:607 → 678
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  28. XM_015114802.2 → XP_014970288.1  transcription factor SOX-6 isoform X17

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:600 → 671
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...

  29. XM_028833625.1 → XP_028689458.1  transcription factor SOX-6 isoform X15

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:605 → 676
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  30. XM_015114804.2 → XP_014970290.1  transcription factor SOX-6 isoform X20

    UniProtKB/TrEMBL
    F7H4A5
    Conserved Domains (1) summary
    cd01388
    Location:524 → 595
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...

  31. XM_028833627.1 → XP_028689460.1  transcription factor SOX-6 isoform X21

    Conserved Domains (1) summary
    cd01388
    Location:459 → 530
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
Nucleotide Protein
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