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ELFN1 extracellular leucine rich repeat and fibronectin type III domain containing 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 697716, updated on 17-Aug-2024

Summary

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Official Symbol
ELFN1provided by VGNC
Official Full Name
extracellular leucine rich repeat and fibronectin type III domain containing 1provided by VGNC
Primary source
VGNC:VGNC:72204
See related
Ensembl:ENSMMUG00000003283
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See ELFN1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 3 NC_041756.1 (34745746..34828545)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 3 NC_027895.1 (35615860..35699669)

Chromosome 3 - NC_041756.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114676721 Neighboring gene transcription factor A, mitochondrial-like Neighboring gene uncharacterized LOC100428089 Neighboring gene uncharacterized LOC106997330 Neighboring gene mitotic arrest deficient 1 like 1 Neighboring gene uncharacterized LOC114676859 Neighboring gene uncharacterized LOC106997332

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein ELFN1
Names
extracellular leucine-rich repeat and fibronectin type-III domain-containing protein 1
protein phosphatase 1, regulatory subunit 28

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001265758.1 → NP_001252687.1  protein ELFN1 precursor

    See identical proteins and their annotated locations for NP_001252687.1

    Status: PROVISIONAL

    Source sequence(s)
    JV600280
    UniProtKB/TrEMBL
    F7FK41, I2CUN3
    Related
    ENSMMUP00000004373.3, ENSMMUT00000004639.4
    Conserved Domains (3) summary
    TIGR00864
    Location:162 → 256
    PCC; polycystin cation channel protein
    sd00031
    Location:65 → 85
    LRR_1; leucine-rich repeat [structural motif]
    pfam13855
    Location:85 → 144
    LRR_8; Leucine rich repeat

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041756.1 Reference Mmul_10 Primary Assembly

    Range
    34745746..34828545
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015133161.2 → XP_014988647.1  protein ELFN1 isoform X1

    UniProtKB/TrEMBL
    F7FK41, I2CUN3
    Conserved Domains (3) summary
    TIGR00864
    Location:162 → 256
    PCC; polycystin cation channel protein
    sd00031
    Location:65 → 85
    LRR_1; leucine-rich repeat [structural motif]
    pfam13855
    Location:85 → 144
    LRR_8; Leucine rich repeat

  2. XM_015133163.2 → XP_014988649.1  protein ELFN1 isoform X1

    UniProtKB/TrEMBL
    F7FK41, I2CUN3
    Conserved Domains (3) summary
    TIGR00864
    Location:162 → 256
    PCC; polycystin cation channel protein
    sd00031
    Location:65 → 85
    LRR_1; leucine-rich repeat [structural motif]
    pfam13855
    Location:85 → 144
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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