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SEMA4D semaphorin 4D [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 697697, updated on 17-Aug-2024

Summary

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Official Symbol
SEMA4Dprovided by VGNC
Official Full Name
semaphorin 4Dprovided by VGNC
Primary source
VGNC:VGNC:77166
See related
Ensembl:ENSMMUG00000008629
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SEMA4D in Genome Data Viewer
Location:
chromosome: 15
Exon count:
22
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 15 NC_041768.1 (104408091..104543051, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 15 NC_027907.1 (105624467..105702540, complement)

Chromosome 15 - NC_041768.1Genomic Context describing neighboring genes Neighboring gene SECIS binding protein 2 Neighboring gene CDC28 protein kinase regulatory subunit 2 Neighboring gene proliferation-associated protein 2G4-like Neighboring gene growth arrest and DNA damage inducible gamma Neighboring gene uncharacterized LOC114672843

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of alkaline phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ossification involved in bone maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-4D

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041768.1 Reference Mmul_10 Primary Assembly

    Range
    104408091..104543051 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028835312.1 → XP_028691145.1  semaphorin-4D isoform X3

    UniProtKB/TrEMBL
    F6VZ03, H9FNR9
    Related
    ENSMMUP00000038913.3, ENSMMUT00000045874.3
    Conserved Domains (3) summary
    cd11259
    Location:31 → 501
    Sema_4D; The Sema domain, a protein interacting module, of semaphorin 4D (Sema4D, also known as CD100)
    smart00423
    Location:503 → 554
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl11960
    Location:622 → 679
    Ig; Immunoglobulin domain

  2. XM_015118066.2 → XP_014973552.2  semaphorin-4D isoform X1

    UniProtKB/TrEMBL
    A0A8J8Y3Y5, F7FCM4, G7NEM8, H9FNS0
    Related
    ENSMMUP00000011320.3, ENSMMUT00000012067.4
    Conserved Domains (3) summary
    cd05873
    Location:559 → 645
    Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D
    cd11259
    Location:31 → 501
    Sema_4D; The Sema domain, a protein interacting module, of semaphorin 4D (Sema4D, also known as CD100)
    smart00423
    Location:503 → 554
    PSI; domain found in Plexins, Semaphorins and Integrins

  3. XM_028835310.1 → XP_028691143.1  semaphorin-4D isoform X2

    UniProtKB/TrEMBL
    A0A8J8Y3Y5, G7NEM8, H9FNS0
    Conserved Domains (3) summary
    cd05873
    Location:530 → 616
    Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D
    smart00423
    Location:474 → 525
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl15693
    Location:31 → 472
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  4. XM_015118062.2 → XP_014973548.2  semaphorin-4D isoform X1

    UniProtKB/TrEMBL
    A0A8J8Y3Y5, F7FCM4, G7NEM8, H9FNS0
    Related
    ENSMMUP00000078848.1, ENSMMUT00000095301.1
    Conserved Domains (3) summary
    cd05873
    Location:559 → 645
    Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D
    cd11259
    Location:31 → 501
    Sema_4D; The Sema domain, a protein interacting module, of semaphorin 4D (Sema4D, also known as CD100)
    smart00423
    Location:503 → 554
    PSI; domain found in Plexins, Semaphorins and Integrins

  5. XM_028835309.1 → XP_028691142.1  semaphorin-4D isoform X1

    UniProtKB/TrEMBL
    A0A8J8Y3Y5, F7FCM4, G7NEM8, H9FNS0
    Conserved Domains (3) summary
    cd05873
    Location:559 → 645
    Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D
    cd11259
    Location:31 → 501
    Sema_4D; The Sema domain, a protein interacting module, of semaphorin 4D (Sema4D, also known as CD100)
    smart00423
    Location:503 → 554
    PSI; domain found in Plexins, Semaphorins and Integrins

  6. XM_028835311.1 → XP_028691144.1  semaphorin-4D isoform X3

    UniProtKB/TrEMBL
    F6VZ03, H9FNR9
    Conserved Domains (3) summary
    cd11259
    Location:31 → 501
    Sema_4D; The Sema domain, a protein interacting module, of semaphorin 4D (Sema4D, also known as CD100)
    smart00423
    Location:503 → 554
    PSI; domain found in Plexins, Semaphorins and Integrins
    cl11960
    Location:622 → 679
    Ig; Immunoglobulin domain

  7. XM_028835313.1 → XP_028691146.1  semaphorin-4D isoform X4

    UniProtKB/TrEMBL
    H9FNR9
    Conserved Domains (2) summary
    cd11259
    Location:31 → 501
    Sema_4D; The Sema domain, a protein interacting module, of semaphorin 4D (Sema4D, also known as CD100)
    smart00423
    Location:503 → 554
    PSI; domain found in Plexins, Semaphorins and Integrins

  8. XM_015118064.2 → XP_014973550.2  semaphorin-4D isoform X1

    UniProtKB/TrEMBL
    A0A8J8Y3Y5, F7FCM4, G7NEM8, H9FNS0
    Related
    ENSMMUP00000067860.1, ENSMMUT00000101226.1
    Conserved Domains (3) summary
    cd05873
    Location:559 → 645
    Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D
    cd11259
    Location:31 → 501
    Sema_4D; The Sema domain, a protein interacting module, of semaphorin 4D (Sema4D, also known as CD100)
    smart00423
    Location:503 → 554
    PSI; domain found in Plexins, Semaphorins and Integrins

  9. XM_028835314.1 → XP_028691147.1  semaphorin-4D isoform X4

    UniProtKB/TrEMBL
    H9FNR9
    Conserved Domains (2) summary
    cd11259
    Location:31 → 501
    Sema_4D; The Sema domain, a protein interacting module, of semaphorin 4D (Sema4D, also known as CD100)
    smart00423
    Location:503 → 554
    PSI; domain found in Plexins, Semaphorins and Integrins
Nucleotide Protein
Heading Accession and Version

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