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TSKU tsukushi, small leucine rich proteoglycan [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 697691, updated on 17-Aug-2024

Summary

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Official Symbol
TSKUprovided by VGNC
Official Full Name
tsukushi, small leucine rich proteoglycanprovided by VGNC
Primary source
VGNC:VGNC:79746
See related
Ensembl:ENSMMUG00000058889
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See TSKU in Genome Data Viewer
Location:
chromosome: 14
Exon count:
4
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (69838944..69853811)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (68959396..68974231)

Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106993403 Neighboring gene olfactory guanylyl cyclase GC-D-like Neighboring gene leucine rich repeat containing 32 Neighboring gene uncharacterized LOC106993392 Neighboring gene alkaline ceramidase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tsukushin
Names
tsukushi small leucine rich proteoglycan homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041767.1 Reference Mmul_10 Primary Assembly

    Range
    69838944..69853811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015115240.2 → XP_014970726.1  tsukushin

    UniProtKB/TrEMBL
    A0A5F7Z8M0, G7NED8
    Related
    ENSMMUP00000061878.1, ENSMMUT00000092676.1
    Conserved Domains (2) summary
    COG4886
    Location:63 → 316
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:62 → 85
    LRR_RI; leucine-rich repeat [structural motif]

  2. XM_015115241.2 → XP_014970727.1  tsukushin

    UniProtKB/TrEMBL
    A0A5F7Z8M0, G7NED8
    Conserved Domains (2) summary
    COG4886
    Location:63 → 316
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:62 → 85
    LRR_RI; leucine-rich repeat [structural motif]

  3. XM_028833837.1 → XP_028689670.1  tsukushin

    UniProtKB/TrEMBL
    A0A5F7Z8M0, G7NED8
    Conserved Domains (2) summary
    COG4886
    Location:63 → 316
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:62 → 85
    LRR_RI; leucine-rich repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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Research Materials