U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

FRAS1 Fraser extracellular matrix complex subunit 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 697358, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
FRAS1provided by VGNC
Official Full Name
Fraser extracellular matrix complex subunit 1provided by VGNC
Primary source
VGNC:VGNC:72743
See related
Ensembl:ENSMMUG00000002564
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See FRAS1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
75
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (55210503..55657978, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (56036742..56482270, complement)

Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene annexin A3 Neighboring gene high mobility group protein B1 pseudogene Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell communication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
extracellular matrix protein FRAS1
Names
Fraser syndrome 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041758.1 Reference Mmul_10 Primary Assembly

    Range
    55210503..55657978 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015138463.2 → XP_014993949.2  extracellular matrix protein FRAS1 isoform X2

    UniProtKB/TrEMBL
    F7HSN8
    Related
    ENSMMUP00000003452.4, ENSMMUT00000003653.4
    Conserved Domains (11) summary
    pfam03302
    Location:515 → 944
    VSP; Giardia variant-specific surface protein
    smart00237
    Location:2555 → 2650
    Calx_beta; Domains in Na-Ca exchangers and integrin-beta4
    smart00214
    Location:28 → 87
    VWC; von Willebrand factor (vWF) type C domain
    smart00261
    Location:952 → 996
    FU; Furin-like repeats
    TIGR00845
    Location:2780 → 3047
    caca; sodium/calcium exchanger 1
    pfam00093
    Location:95 → 152
    VWC; von Willebrand factor type C domain
    pfam00757
    Location:411 → 519
    Furin-like; Furin-like cysteine rich region
    pfam15913
    Location:1009 → 1099
    Furin-like_2; Furin-like repeat, cysteine-rich
    cl17735
    Location:285 → 342
    VWC; von Willebrand factor type C domain
    pfam16184
    Location:2297 → 2406
    Cadherin_3; Cadherin-like
    cl02522
    Location:3039 → 3133
    Calx-beta; Calx-beta domain

  2. XM_028848480.1 → XP_028704313.1  extracellular matrix protein FRAS1 isoform X1

    UniProtKB/TrEMBL
    F7HSN8
    Conserved Domains (11) summary
    pfam03302
    Location:519 → 948
    VSP; Giardia variant-specific surface protein
    smart00237
    Location:2559 → 2654
    Calx_beta; Domains in Na-Ca exchangers and integrin-beta4
    smart00214
    Location:371 → 420
    VWC; von Willebrand factor (vWF) type C domain
    smart00261
    Location:956 → 1000
    FU; Furin-like repeats
    TIGR00845
    Location:2784 → 3051
    caca; sodium/calcium exchanger 1
    pfam00093
    Location:99 → 156
    VWC; von Willebrand factor type C domain
    pfam00757
    Location:415 → 523
    Furin-like; Furin-like cysteine rich region
    pfam15913
    Location:1013 → 1103
    Furin-like_2; Furin-like repeat, cysteine-rich
    cl17735
    Location:289 → 346
    VWC; von Willebrand factor type C domain
    pfam16184
    Location:2301 → 2410
    Cadherin_3; Cadherin-like
    cl02522
    Location:3043 → 3137
    Calx-beta; Calx-beta domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials