U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

CHD9 chromodomain helicase DNA binding protein 9 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 696367, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
CHD9provided by VGNC
Official Full Name
chromodomain helicase DNA binding protein 9provided by VGNC
Primary source
VGNC:VGNC:71101
See related
Ensembl:ENSMMUG00000016310
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See CHD9 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
45
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (40246593..40445973)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (37128742..37302089)

Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114674293 Neighboring gene uncharacterized LOC114674294 Neighboring gene uncharacterized LOC106995020 Neighboring gene pachytene checkpoint protein 2 homolog Neighboring gene golgin subfamily A member 8T-like Neighboring gene small nucleolar RNA U13 Neighboring gene 5S ribosomal RNA

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
chromodomain-helicase-DNA-binding protein 9
Names
chromodomain-helicase-DNA-binding protein 9-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041773.1 Reference Mmul_10 Primary Assembly

    Range
    40246593..40445973
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028840897.1 → XP_028696730.1  chromodomain-helicase-DNA-binding protein 9 isoform X4

    UniProtKB/TrEMBL
    G7NPA7
    Conserved Domains (6) summary
    smart00592
    Location:2541 → 2585
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:811 → 1480
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    COG5422
    Location:176 → 362
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    COG5641
    Location:161 → 568
    GAT1; GATA Zn-finger-containing transcription factor [Transcription]
    cd18663
    Location:770 → 828
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:686 → 750
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

  2. XM_028840896.1 → XP_028696729.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL
    F7GT65, G7NPA7
    Related
    ENSMMUP00000021427.4, ENSMMUT00000022909.4
    Conserved Domains (6) summary
    smart00592
    Location:2558 → 2602
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:811 → 1480
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    COG5422
    Location:176 → 362
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    COG5641
    Location:161 → 568
    GAT1; GATA Zn-finger-containing transcription factor [Transcription]
    cd18663
    Location:770 → 828
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:686 → 750
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

  3. XM_028840898.1 → XP_028696731.1  chromodomain-helicase-DNA-binding protein 9 isoform X5

    UniProtKB/TrEMBL
    G7NPA7
    Conserved Domains (7) summary
    PTZ00121
    Location:511 → 755
    PTZ00121; MAEBL; Provisional
    smart00592
    Location:2484 → 2533
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:811 → 1480
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    COG5048
    Location:80 → 479
    COG5048; FOG: Zn-finger [General function prediction only]
    cd18663
    Location:770 → 828
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:686 → 750
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cl24283
    Location:164 → 355
    DUF5349; Family of unknown function (DUF5349)

  4. XM_015126130.2 → XP_014981616.2  chromodomain-helicase-DNA-binding protein 9 isoform X6

    UniProtKB/TrEMBL
    G7NPA7
    Conserved Domains (7) summary
    PTZ00121
    Location:511 → 755
    PTZ00121; MAEBL; Provisional
    smart00592
    Location:2484 → 2533
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:811 → 1480
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    COG5048
    Location:80 → 479
    COG5048; FOG: Zn-finger [General function prediction only]
    cd18663
    Location:770 → 828
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:686 → 750
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cl24283
    Location:164 → 355
    DUF5349; Family of unknown function (DUF5349)

  5. XM_015126128.2 → XP_014981614.2  chromodomain-helicase-DNA-binding protein 9 isoform X3

    UniProtKB/TrEMBL
    G7NPA7
    Conserved Domains (7) summary
    PTZ00121
    Location:511 → 755
    PTZ00121; MAEBL; Provisional
    smart00592
    Location:2542 → 2586
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:811 → 1480
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    COG5048
    Location:80 → 479
    COG5048; FOG: Zn-finger [General function prediction only]
    cd18663
    Location:770 → 828
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:686 → 750
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cl24283
    Location:164 → 355
    DUF5349; Family of unknown function (DUF5349)

  6. XM_028840895.1 → XP_028696728.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    UniProtKB/TrEMBL
    F7GT65, G7NPA7
    Conserved Domains (6) summary
    smart00592
    Location:2558 → 2602
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:811 → 1480
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    COG5422
    Location:176 → 362
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    COG5641
    Location:161 → 568
    GAT1; GATA Zn-finger-containing transcription factor [Transcription]
    cd18663
    Location:770 → 828
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:686 → 750
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

  7. XM_015126126.2 → XP_014981612.2  chromodomain-helicase-DNA-binding protein 9 isoform X2

    UniProtKB/TrEMBL
    G7NPA7
    Conserved Domains (6) summary
    smart00592
    Location:2557 → 2601
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:811 → 1480
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    COG5422
    Location:176 → 362
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    COG5641
    Location:161 → 568
    GAT1; GATA Zn-finger-containing transcription factor [Transcription]
    cd18663
    Location:770 → 828
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:686 → 750
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

  8. XM_015126131.2 → XP_014981617.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

    UniProtKB/TrEMBL
    G7NPA7
    Conserved Domains (6) summary
    smart00592
    Location:2084 → 2128
    BRK; domain in transcription and CHROMO domain helicases
    cd00024
    Location:218 → 278
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    cd00046
    Location:405 → 554
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:389 → 676
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:708 → 822
    Helicase_C; Helicase conserved C-terminal domain
    pfam00385
    Location:300 → 353
    Chromo; Chromo (CHRromatin Organization MOdifier) domain

  9. XM_028840899.1 → XP_028696732.1  chromodomain-helicase-DNA-binding protein 9 isoform X8

    UniProtKB/TrEMBL
    G7NPA7
    Conserved Domains (6) summary
    PTZ00121
    Location:37 → 281
    PTZ00121; MAEBL; Provisional
    smart00592
    Location:2068 → 2112
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:337 → 1006
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd18663
    Location:296 → 354
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:212 → 276
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:386 → 607
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9

  10. XM_015126132.2 → XP_014981618.1  chromodomain-helicase-DNA-binding protein 9 isoform X9

    UniProtKB/TrEMBL
    G7NPA7
    Conserved Domains (6) summary
    smart00592
    Location:2051 → 2095
    BRK; domain in transcription and CHROMO domain helicases
    cd00024
    Location:185 → 245
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    cd00046
    Location:372 → 521
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:356 → 643
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:675 → 789
    Helicase_C; Helicase conserved C-terminal domain
    pfam00385
    Location:267 → 320
    Chromo; Chromo (CHRromatin Organization MOdifier) domain

  11. XM_028840900.1 → XP_028696733.1  chromodomain-helicase-DNA-binding protein 9 isoform X10

    UniProtKB/TrEMBL
    G7NPA7
    Conserved Domains (6) summary
    PTZ00121
    Location:4 → 248
    PTZ00121; MAEBL; Provisional
    smart00592
    Location:2035 → 2079
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:304 → 973
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd18663
    Location:263 → 321
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:179 → 243
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:353 → 574
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9

  12. XM_028840901.1 → XP_028696734.1  chromodomain-helicase-DNA-binding protein 9 isoform X11

    Conserved Domains (4) summary
    smart00592
    Location:1897 → 1941
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:150 → 819
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd18663
    Location:109 → 167
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:25 → 89
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins

RNA

  1. XR_003725398.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials