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NPHP1 nephrocystin 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 696218, updated on 17-Aug-2024

Summary

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Official Symbol
NPHP1provided by VGNC
Official Full Name
nephrocystin 1provided by VGNC
Primary source
VGNC:VGNC:75383
See related
Ensembl:ENSMMUG00000022802
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See NPHP1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
20
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 13 NC_041766.1 (13677766..13746017, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 13 NC_027905.1 (105580921..105649678, complement)

Chromosome 13 - NC_041766.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106993129 Neighboring gene mal, T cell differentiation protein like Neighboring gene acyl-protein thioesterase 1 pseudogene Neighboring gene mitoregulin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein localization involved in establishment of planar polarity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nephrocystin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041766.1 Reference Mmul_10 Primary Assembly

    Range
    13677766..13746017 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015113118.1 → XP_014968604.1  nephrocystin-1 isoform X3

    UniProtKB/TrEMBL
    F6UWS1
    Conserved Domains (1) summary
    cd11770
    Location:157 → 210
    SH3_Nephrocystin; Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

  2. XM_002799380.2 → XP_002799426.1  nephrocystin-1 isoform X1

    See identical proteins and their annotated locations for XP_002799426.1

    UniProtKB/TrEMBL
    F6UWS1, F7H183
    Related
    ENSMMUP00000036144.2, ENSMMUT00000043131.3
    Conserved Domains (1) summary
    cd11770
    Location:157 → 210
    SH3_Nephrocystin; Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

  3. XM_015113117.2 → XP_014968603.1  nephrocystin-1 isoform X2

    UniProtKB/TrEMBL
    F6UWS1
    Related
    ENSMMUP00000030028.4, ENSMMUT00000032093.4
    Conserved Domains (1) summary
    cd11770
    Location:157 → 210
    SH3_Nephrocystin; Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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