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PRPF19 pre-mRNA processing factor 19 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 696170, updated on 17-Aug-2024

Summary

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Official Symbol
PRPF19provided by VGNC
Official Full Name
pre-mRNA processing factor 19provided by VGNC
Primary source
VGNC:VGNC:76281
Locus tag
EGK_06157
See related
Ensembl:ENSMMUG00000014530
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See PRPF19 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
17
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (13328872..13344653)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (13376796..13392239)

Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 15 member 3 Neighboring gene transmembrane protein 132A Neighboring gene transmembrane protein 109 Neighboring gene uncharacterized LOC106993224 Neighboring gene zona pellucida glycoprotein 1 Neighboring gene prostaglandin D2 receptor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type catalytic step 1 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-processing factor 19
Names
PRP19/PSO4 pre-mRNA processing factor 19 homolog
PRP19/PSO4-like protein
NP_001248010.1
XP_028688358.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001261081.1 → NP_001248010.1  pre-mRNA-processing factor 19

    See identical proteins and their annotated locations for NP_001248010.1

    Status: PROVISIONAL

    Source sequence(s)
    JV044753
    UniProtKB/TrEMBL
    A0A1D5QJ61, A0A8J8XDF3, F7GAB7, G7ND29
    Related
    ENSMMUP00000048083.1, ENSMMUT00000069043.2
    Conserved Domains (4) summary
    cd00200
    Location:223 → 503
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:224 → 262
    7WD40; WD40 repeat [structural motif]
    cd16656
    Location:4 → 56
    RING-Ubox_PRP19; U-box domain, a modified RING finger, found in pre-mRNA-processing factor 19 (Prp19) and similar proteins
    pfam08606
    Location:69 → 133
    Prp19; Prp19/Pso4-like

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041767.1 Reference Mmul_10 Primary Assembly

    Range
    13328872..13344653
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028832525.1 → XP_028688358.1  pre-mRNA-processing factor 19 isoform X1

    UniProtKB/TrEMBL
    F7GAB7
    Conserved Domains (3) summary
    cd00200
    Location:138 → 418
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:139 → 177
    7WD40; WD40 repeat [structural motif]
    pfam08606
    Location:1 → 48
    Prp19; Prp19/Pso4-like
Nucleotide Protein
Heading Accession and Version

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