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L1TD1 LINE1 type transposase domain containing 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 696162, updated on 17-Aug-2024

Summary

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Official Symbol
L1TD1provided by VGNC
Official Full Name
LINE1 type transposase domain containing 1provided by VGNC
Primary source
VGNC:VGNC:74125
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See L1TD1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (162238034..162243233, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (61881217..61897499)

Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene bcl-2-binding component 3 Neighboring gene ubiquitin specific peptidase 1 Neighboring gene U6 spliceosomal RNA Neighboring gene KN motif and ankyrin repeat domains 4 Neighboring gene uncharacterized LOC114669835 Neighboring gene uncharacterized LOC114672197

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in retrotransposition IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LINE-1 type transposase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041754.1 Reference Mmul_10 Primary Assembly

    Range
    162238034..162243233 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001084821.4 → XP_001084821.2  LINE-1 type transposase domain-containing protein 1

    UniProtKB/TrEMBL
    A0A088QCF6
    Conserved Domains (2) summary
    pfam02994
    Location:721 → 815
    Transposase_22; L1 transposable element RBD-like domain
    pfam17490
    Location:819 → 882
    Tnp_22_dsRBD; L1 transposable element dsRBD-like domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Research Materials