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WDHD1 WD repeat and HMG-box DNA binding protein 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 695910, updated on 17-Aug-2024

Summary

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Official Symbol
WDHD1provided by VGNC
Official Full Name
WD repeat and HMG-box DNA binding protein 1provided by VGNC
Primary source
VGNC:VGNC:79376
See related
Ensembl:ENSMMUG00000000302
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See WDHD1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
28
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 7 NC_041760.1 (117049824..117135765, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 7 NC_027899.1 (116902025..116988234, complement)

Chromosome 7 - NC_041760.1Genomic Context describing neighboring genes Neighboring gene U6atac minor spliceosomal RNA Neighboring gene GTP cyclohydrolase 1 Neighboring gene farnesyl pyrophosphate synthase pseudogene Neighboring gene 60S ribosomal protein L31 pseudogene Neighboring gene 40S ribosomal protein SA-like Neighboring gene suppressor of cytokine signaling 4 Neighboring gene mitogen-activated protein kinase 1 interacting protein 1 like Neighboring gene small nucleolar RNA U3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA-templated DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear replication fork IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat and HMG-box DNA-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041760.1 Reference Mmul_10 Primary Assembly

    Range
    117049824..117135765 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015143730.2 → XP_014999216.2  WD repeat and HMG-box DNA-binding protein 1 isoform X4

    UniProtKB/TrEMBL
    I0FNV9
    Conserved Domains (4) summary
    smart00398
    Location:892 → 949
    HMG; high mobility group
    sd00039
    Location:17 → 58
    7WD40; WD40 repeat [structural motif]
    pfam12341
    Location:307 → 590
    Mcl1_mid; Minichromosome loss protein, Mcl1, middle region
    cl29593
    Location:5 → 165
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_015143731.2 → XP_014999217.2  WD repeat and HMG-box DNA-binding protein 1 isoform X4

    UniProtKB/TrEMBL
    I0FNV9
    Conserved Domains (4) summary
    smart00398
    Location:892 → 949
    HMG; high mobility group
    sd00039
    Location:17 → 58
    7WD40; WD40 repeat [structural motif]
    pfam12341
    Location:307 → 590
    Mcl1_mid; Minichromosome loss protein, Mcl1, middle region
    cl29593
    Location:5 → 165
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_015143729.2 → XP_014999215.2  WD repeat and HMG-box DNA-binding protein 1 isoform X3

    UniProtKB/TrEMBL
    I0FNV9
    Conserved Domains (4) summary
    smart00398
    Location:984 → 1041
    HMG; high mobility group
    sd00039
    Location:17 → 52
    7WD40; WD40 repeat [structural motif]
    pfam12341
    Location:400 → 682
    Mcl1_mid; Minichromosome loss protein, Mcl1, middle region
    cl29593
    Location:10 → 257
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  4. XM_015143727.2 → XP_014999213.2  WD repeat and HMG-box DNA-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    I0FNV9
    Related
    ENSMMUP00000000409.4, ENSMMUT00000000441.4
    Conserved Domains (4) summary
    smart00398
    Location:1013 → 1070
    HMG; high mobility group
    cd00200
    Location:10 → 288
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:21 → 54
    7WD40; WD40 repeat [structural motif]
    pfam12341
    Location:431 → 713
    Mcl1_mid; Minichromosome loss protein, Mcl1, middle region

  5. XM_015143726.2 → XP_014999212.2  WD repeat and HMG-box DNA-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A1D5QW14, I0FNV9
    Related
    ENSMMUP00000052244.2, ENSMMUT00000067415.2
    Conserved Domains (4) summary
    smart00398
    Location:1015 → 1072
    HMG; high mobility group
    cd00200
    Location:10 → 288
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:21 → 54
    7WD40; WD40 repeat [structural motif]
    pfam12341
    Location:431 → 713
    Mcl1_mid; Minichromosome loss protein, Mcl1, middle region
Nucleotide Protein
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