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PHAF1 phagosome assembly factor 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 695885, updated on 17-Aug-2024

Summary

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Official Symbol
PHAF1provided by VGNC
Official Full Name
phagosome assembly factor 1provided by VGNC
Primary source
VGNC:VGNC:70438
Locus tag
EGK_12875
See related
Ensembl:ENSMMUG00000018102
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Also known as
C16orf70; C20H16orf70
Orthologs
human mouse all
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Genomic context

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See PHAF1 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
16
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 20 NC_041773.1 (54294635..54333242)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 20 NC_027912.1 (51386088..51424769)

Chromosome 20 - NC_041773.1Genomic Context describing neighboring genes Neighboring gene carboxylesterase 4A Neighboring gene core-binding factor subunit beta Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 Neighboring gene uncharacterized LOC114674425 Neighboring gene TNFRSF1A associated via death domain Neighboring gene F-box and leucine rich repeat protein 8 Neighboring gene heat shock transcription factor 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in Golgi to plasma membrane protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in dendrite IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UPF0183 protein C16orf70 homolog
Names
chromosome 20 C16orf70 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041773.1 Reference Mmul_10 Primary Assembly

    Range
    54294635..54333242
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015126355.2 → XP_014981841.1  UPF0183 protein C16orf70 homolog isoform X1

    Conserved Domains (1) summary
    pfam03676
    Location:15 → 504
    UPF0183; uncharacterized protein family (UPF0183)

  2. XM_001086873.4 → XP_001086873.1  UPF0183 protein C16orf70 homolog isoform X2

    See identical proteins and their annotated locations for XP_001086873.1

    UniProtKB/TrEMBL
    A0A1D5RGN3, A0A5S6RDI8, A0A8J8XCQ3, F7EFR6, G7NQ41
    Related
    ENSMMUP00000059477.2, ENSMMUT00000071677.2
    Conserved Domains (1) summary
    pfam03676
    Location:15 → 407
    UPF0183; Uncharacterized protein family (UPF0183)
Nucleotide Protein
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Gene LinkOut

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