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PCDH10 protocadherin 10 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 695100, updated on 17-Aug-2024

Summary

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Official Symbol
PCDH10provided by VGNC
Official Full Name
protocadherin 10provided by VGNC
Primary source
VGNC:VGNC:75594
See related
Ensembl:ENSMMUG00000023149
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See PCDH10 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (130896979..130956446)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (132723057..132782555)

Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114678398 Neighboring gene uncharacterized LOC106998500 Neighboring gene 40S ribosomal protein S25 Neighboring gene uncharacterized LOC114678181

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041758.1 Reference Mmul_10 Primary Assembly

    Range
    130896979..130956446
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002804195.3 → XP_002804241.2  protocadherin-10 isoform X2

    UniProtKB/TrEMBL
    F7FHP2, I2CY84
    Related
    ENSMMUP00000030475.4, ENSMMUT00000032567.4
    Conserved Domains (3) summary
    cd11304
    Location:254 → 354
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:19 → 101
    Cadherin_2; Cadherin-like
    pfam16492
    Location:713 → 838
    Cadherin_C_2; Cadherin cytoplasmic C-terminal

  2. XM_015139211.2 → XP_014994697.1  protocadherin-10 isoform X1

    UniProtKB/TrEMBL
    I2CY84
    Related
    ENSMMUP00000034791.3, ENSMMUT00000041776.3
    Conserved Domains (3) summary
    cd11304
    Location:254 → 354
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:19 → 101
    Cadherin_2; Cadherin-like
    pfam16492
    Location:713 → 838
    Cadherin_C_2; Cadherin cytoplasmic C-terminal
Nucleotide Protein
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