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IFT52 intraflagellar transport 52 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 694933, updated on 17-Aug-2024

Summary

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Official Symbol
IFT52provided by VGNC
Official Full Name
intraflagellar transport 52provided by VGNC
Primary source
VGNC:VGNC:84916
Locus tag
EGK_02396
See related
Ensembl:ENSMMUG00000000396
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See IFT52 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
17
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 10 NC_041763.1 (78821509..78876634)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 10 NC_027902.1 (20863712..20918028, complement)

Chromosome 10 - NC_041763.1Genomic Context describing neighboring genes Neighboring gene L3MBTL histone methyl-lysine binding protein 1 Neighboring gene transmembrane protein 14C pseudogene Neighboring gene serum/glucocorticoid regulated kinase 2 Neighboring gene 60S ribosomal protein L27a pseudogene Neighboring gene MYB proto-oncogene like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intraciliary transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centriole IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of intraciliary transport particle B IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
intraflagellar transport protein 52 homolog
Names
Protein NGD5-like protein
intraflagellar transport 52 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001261644.1 → NP_001248573.1  intraflagellar transport protein 52 homolog

    See identical proteins and their annotated locations for NP_001248573.1

    Status: PROVISIONAL

    Source sequence(s)
    JV045585
    UniProtKB/TrEMBL
    A0A8J8Y4U0, F6X5E4, F7AQX1, G7N4T3, H9YUQ9
    Related
    ENSMMUP00000000531.3, ENSMMUT00000000578.3
    Conserved Domains (1) summary
    cl23805
    Location:15 → 116
    ABC_transp_aux; ABC-type uncharacterized transport system

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041763.1 Reference Mmul_10 Primary Assembly

    Range
    78821509..78876634
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028827171.1 → XP_028683004.1  intraflagellar transport protein 52 homolog isoform X4

  2. XM_028827169.1 → XP_028683002.1  intraflagellar transport protein 52 homolog isoform X2

    UniProtKB/TrEMBL
    A0A5F7ZBB4, F7AQX1
    Related
    ENSMMUP00000062479.1, ENSMMUT00000100395.1
    Conserved Domains (1) summary
    cl23805
    Location:15 → 116
    ABC_transp_aux; ABC-type uncharacterized transport system

  3. XM_015148814.2 → XP_015004300.1  intraflagellar transport protein 52 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8J8Y4U0, F6X5E4, F7AQX1, G7N4T3, H9YUQ9
    Related
    ENSMMUP00000062960.1, ENSMMUT00000081059.1
    Conserved Domains (1) summary
    cl23805
    Location:15 → 116
    ABC_transp_aux; ABC-type uncharacterized transport system

  4. XM_028827170.1 → XP_028683003.1  intraflagellar transport protein 52 homolog isoform X3

Nucleotide Protein
Heading Accession and Version

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