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HNRNPD heterogeneous nuclear ribonucleoprotein D [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 694867, updated on 17-Aug-2024

Summary

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Official Symbol
HNRNPDprovided by VGNC
Official Full Name
heterogeneous nuclear ribonucleoprotein Dprovided by VGNC
Primary source
VGNC:VGNC:106590
Locus tag
EGK_15725
See related
Ensembl:ENSMMUG00000060484
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See HNRNPD in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (51351283..51371879)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (52029466..52050325)

Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD42 Neighboring gene immunoglobulin (CD79A) binding protein 1-like Neighboring gene uncharacterized LOC114678302 Neighboring gene uncharacterized LOC114678303 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heterogeneous nuclear ribonucleoprotein D0
Names
heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001260807.2 → NP_001247736.1  heterogeneous nuclear ribonucleoprotein D0

    See identical proteins and their annotated locations for NP_001247736.1

    Status: PROVISIONAL

    Source sequence(s)
    JV043560
    UniProtKB/TrEMBL
    A0A8J8XTP7, F7AVH8, G7MSX7
    Related
    ENSMMUP00000074156.1, ENSMMUT00000107763.1
    Conserved Domains (3) summary
    cd12583
    Location:183 → 257
    RRM2_hnRNPD; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins
    pfam08143
    Location:60 → 78
    CBFNT; CBFNT (NUC161) domain
    cd12756
    Location:99 → 172
    RRM1_hnRNPD; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041758.1 Reference Mmul_10 Primary Assembly

    Range
    51351283..51371879
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015138420.2 → XP_014993906.1  heterogeneous nuclear ribonucleoprotein D0 isoform X2

    UniProtKB/TrEMBL
    F7APJ0
    Related
    ENSMMUP00000075869.1, ENSMMUT00000079595.1
    Conserved Domains (3) summary
    cd12583
    Location:164 → 238
    RRM2_hnRNPD; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins
    pfam08143
    Location:60 → 78
    CBFNT; CBFNT (NUC161) domain
    cd12756
    Location:80 → 153
    RRM1_hnRNPD; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins

  2. XM_015138422.2 → XP_014993908.1  heterogeneous nuclear ribonucleoprotein D0 isoform X4

    Conserved Domains (3) summary
    cd12583
    Location:164 → 238
    RRM2_hnRNPD; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins
    pfam08143
    Location:60 → 78
    CBFNT; CBFNT (NUC161) domain
    cd12756
    Location:80 → 153
    RRM1_hnRNPD; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins

  3. XM_015138421.2 → XP_014993907.1  heterogeneous nuclear ribonucleoprotein D0 isoform X3

    UniProtKB/TrEMBL
    F7APH2
    Related
    ENSMMUP00000073464.1, ENSMMUT00000082867.1
    Conserved Domains (3) summary
    cd12583
    Location:183 → 257
    RRM2_hnRNPD; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins
    pfam08143
    Location:60 → 78
    CBFNT; CBFNT (NUC161) domain
    cd12756
    Location:99 → 172
    RRM1_hnRNPD; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins

  4. XM_028847967.1 → XP_028703800.1  heterogeneous nuclear ribonucleoprotein D0 isoform X3

    UniProtKB/TrEMBL
    F7APH2
    Conserved Domains (3) summary
    cd12583
    Location:183 → 257
    RRM2_hnRNPD; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins
    pfam08143
    Location:60 → 78
    CBFNT; CBFNT (NUC161) domain
    cd12756
    Location:99 → 172
    RRM1_hnRNPD; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins

  5. XM_028847966.1 → XP_028703799.1  heterogeneous nuclear ribonucleoprotein D0 isoform X1

    UniProtKB/TrEMBL
    A0A8J8XTP7, F7AVH8, G7MSX7
    Conserved Domains (3) summary
    cd12583
    Location:183 → 257
    RRM2_hnRNPD; RNA recognition motif 2 (RRM2) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins
    pfam08143
    Location:60 → 78
    CBFNT; CBFNT (NUC161) domain
    cd12756
    Location:99 → 172
    RRM1_hnRNPD; RNA recognition motif 1 (RRM1) found in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins
Nucleotide Protein
Heading Accession and Version

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