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SP2 Sp2 transcription factor [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 694834, updated on 17-Aug-2024

Summary

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Official Symbol
SP2provided by VGNC
Official Full Name
Sp2 transcription factorprovided by VGNC
Primary source
VGNC:VGNC:77845
See related
Ensembl:ENSMMUG00000004765
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SP2 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
10
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 16 NC_041769.1 (48880918..48916799, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 16 NC_027908.1 (41981365..42017654, complement)

Chromosome 16 - NC_041769.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114673142 Neighboring gene proline rich 15 like Neighboring gene uncharacterized LOC106994018 Neighboring gene pyridoxamine 5'-phosphate oxidase Neighboring gene Sp6 transcription factor Neighboring gene secernin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor Sp2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001257853.2 → NP_001244782.1  transcription factor Sp2

    See identical proteins and their annotated locations for NP_001244782.1

    Status: PROVISIONAL

    Source sequence(s)
    JU320853
    UniProtKB/TrEMBL
    F6SM71, F6SM94, H9EQF0
    Related
    ENSMMUP00000006330.4, ENSMMUT00000006728.4
    Conserved Domains (4) summary
    sd00017
    Location:530 → 549
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:585 → 607
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:571 → 594
    zf-H2C2_2; Zinc-finger double domain
    cd22540
    Location:9 → 526
    SP2_N; N-terminal domain of transcription factor Specificity Protein (SP) 2

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041769.1 Reference Mmul_10 Primary Assembly

    Range
    48880918..48916799 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028835469.1 → XP_028691302.1  transcription factor Sp2 isoform X1

    UniProtKB/TrEMBL
    F6SM71, F6SM94, H9EQF0
    Conserved Domains (4) summary
    sd00017
    Location:530 → 549
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:585 → 607
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:571 → 594
    zf-H2C2_2; Zinc-finger double domain
    cd22540
    Location:9 → 526
    SP2_N; N-terminal domain of transcription factor Specificity Protein (SP) 2

  2. XM_028835470.1 → XP_028691303.1  transcription factor Sp2 isoform X2

    UniProtKB/TrEMBL
    A0A5F7ZI02, F6SM71
    Related
    ENSMMUP00000065232.1, ENSMMUT00000085891.1
    Conserved Domains (4) summary
    sd00017
    Location:523 → 542
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:578 → 600
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:564 → 587
    zf-H2C2_2; Zinc-finger double domain
    cd22540
    Location:2 → 519
    SP2_N; N-terminal domain of transcription factor Specificity Protein (SP) 2

  3. XM_028835471.1 → XP_028691304.1  transcription factor Sp2 isoform X2

    UniProtKB/TrEMBL
    A0A5F7ZI02, F6SM71
    Conserved Domains (4) summary
    sd00017
    Location:523 → 542
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:578 → 600
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:564 → 587
    zf-H2C2_2; Zinc-finger double domain
    cd22540
    Location:2 → 519
    SP2_N; N-terminal domain of transcription factor Specificity Protein (SP) 2
Nucleotide Protein
Heading Accession and Version

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