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INE92_RS20555 family 78 glycoside hydrolase catalytic domain [ Bacteroides xylanisolvens ]

Gene ID: 69482796, updated on 9-Jan-2025

Summary

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Gene symbol
INE92_RS20555
Gene description
family 78 glycoside hydrolase catalytic domain
Locus tag
INE92_RS20555
Gene type
protein coding
Organism
Bacteroides xylanisolvens (strain: CL11T00C03, nat-host: Homo sapiens)
Lineage
Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides
Old locus tag
INE92_04095
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Genomic context

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NZ_CP072216.1Genomic Context describing neighboring genes Neighboring gene ROK family protein Neighboring gene glycoside hydrolase family 2 protein Neighboring gene LacI family DNA-binding transcriptional regulator Neighboring gene carbohydrate-binding family 9-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP072216.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The thermostable alpha-L-rhamnosidase RamA of Clostridium stercorarium: biochemical characterization and primary structure of a bacterial alpha-L-rhamnoside hydrolase, a new type of inverting glycoside hydrolase. Zverlov VV, et al. Mol Microbiol, 2000 Jan. PMID 10632887
  2. Mobile Type VI secretion system loci of the gut Bacteroidales display extensive intra-ecosystem transfer, multi-species spread and geographical clustering. García-Bayona L, et al. PLoS Genet, 2021 Apr. PMID 33901198, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
family 78 glycoside hydrolase catalytic domain

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP072216.1 Reference assembly

    Range
    4943803..4946439 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_004310380.1 MULTISPECIES: family 78 glycoside hydrolase catalytic domain [Bacteroides]

    See identical proteins and their annotated locations for WP_004310380.1

    UniProtKB/TrEMBL
    A0A139LCD6, A0A415FZI4, D6CZQ5, F7M2L6, I9UT31
    Conserved Domains (4) summary
    pfam05592
    Location:357 → 463
    Bac_rhamnosid; Bacterial alpha-L-rhamnosidase concanavalin-like domain
    pfam17390
    Location:798 → 876
    Bac_rhamnosid_C; Bacterial alpha-L-rhamnosidase C-terminal domain
    pfam08531
    Location:174 → 342
    Bac_rhamnosid_N; Alpha-L-rhamnosidase N-terminal domain
    cl29051
    Location:469 → 796
    Bac_rhamnosid6H; Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain
Nucleotide Protein
Heading Accession and Version