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GTF2E2 general transcription factor IIE subunit 2 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 694622, updated on 17-Aug-2024

Summary

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Official Symbol
GTF2E2provided by VGNC
Official Full Name
general transcription factor IIE subunit 2provided by VGNC
Primary source
VGNC:VGNC:73308
Locus tag
EGK_18823
See related
Ensembl:ENSMMUG00000000459
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See GTF2E2 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 8 NC_041761.1 (30870906..30954499, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 8 NC_027900.1 (30637661..30721337, complement)

Chromosome 8 - NC_041761.1Genomic Context describing neighboring genes Neighboring gene transcription initiation factor IIA subunit 2 pseudogene Neighboring gene RNA binding protein, mRNA processing factor Neighboring gene uncharacterized LOC114680219 Neighboring gene elongin-B pseudogene Neighboring gene U5 spliceosomal RNA Neighboring gene small integral membrane protein 18 Neighboring gene 40S ribosomal protein S26-like Neighboring gene glutathione-disulfide reductase Neighboring gene transcription initiation factor TFIID subunit 11-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription factor TFIIE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription initiation factor IIE subunit beta
Names
general transcription factor IIE, polypeptide 2, beta 34kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001260927.1 → NP_001247856.1  transcription initiation factor IIE subunit beta

    See identical proteins and their annotated locations for NP_001247856.1

    Status: PROVISIONAL

    Source sequence(s)
    JV043745
    UniProtKB/TrEMBL
    A0A1D5RFA6, A0A5S6R801, A0A8J8XJ30, G7N0U2, H9Z044
    Related
    ENSMMUP00000059000.2, ENSMMUT00000060033.2
    Conserved Domains (2) summary
    cd07977
    Location:68 → 146
    TFIIE_beta_winged_helix; TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity
    pfam18121
    Location:146 → 204
    TFA2_Winged_2; TFA2 Winged helix domain 2

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041761.1 Reference Mmul_10 Primary Assembly

    Range
    30870906..30954499 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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