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YTHDC2 YTH N6-methyladenosine RNA binding protein C2 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 694612, updated on 17-Aug-2024

Summary

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Official Symbol
YTHDC2provided by VGNC
Official Full Name
YTH N6-methyladenosine RNA binding protein C2provided by VGNC
Primary source
VGNC:VGNC:79452
See related
Ensembl:ENSMMUG00000001376
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See YTHDC2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
30
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (111037711..111118035)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (110945529..111026350)

Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene MCC regulator of WNT signaling pathway Neighboring gene U4atac minor spliceosomal RNA Neighboring gene testis specific serine kinase 1B Neighboring gene potassium calcium-activated channel subfamily N member 2 Neighboring gene uncharacterized LOC106998891

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase YTHDC2; 3'-5' RNA helicase YTHDC2
Names
YTH domain containing 2
putative ATP-dependent RNA helicase YTHDC2
XP_028705493.1
XP_028705494.1
XP_028705495.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041759.1 Reference Mmul_10 Primary Assembly

    Range
    111037711..111118035
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028849661.1 → XP_028705494.1  3'-5' RNA helicase YTHDC2 isoform X2

    UniProtKB/TrEMBL
    H9F9F5
    Conserved Domains (5) summary
    COG1643
    Location:27 → 854
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    sd00045
    Location:343 → 375
    ANK; ANK repeat [structural motif]
    pfam04146
    Location:1126 → 1257
    YTH; YT521-B-like domain
    pfam07717
    Location:809 → 904
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
    cd17987
    Location:31 → 206
    DEXHc_YTHDC2; DEXH-box helicase domain of YTH domain containing 2

  2. XM_028849662.1 → XP_028705495.1  3'-5' RNA helicase YTHDC2 isoform X3

    UniProtKB/TrEMBL
    H9F9F5
    Conserved Domains (6) summary
    COG0666
    Location:189 → 273
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    COG1643
    Location:318 → 716
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    sd00045
    Location:205 → 237
    ANK; ANK repeat [structural motif]
    pfam04146
    Location:988 → 1119
    YTH; YT521-B-like domain
    pfam07717
    Location:671 → 766
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
    cl28899
    Location:1 → 68
    DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

  3. XM_028849660.1 → XP_028705493.1  3'-5' RNA helicase YTHDC2 isoform X1

    UniProtKB/TrEMBL
    F7D614, G7MVJ8
    Related
    ENSMMUP00000001834.4, ENSMMUT00000001947.4
    Conserved Domains (6) summary
    cd06007
    Location:46 → 104
    R3H_DEXH_helicase; R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine ...
    COG1643
    Location:189 → 1016
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    sd00045
    Location:505 → 537
    ANK; ANK repeat [structural motif]
    pfam04146
    Location:1288 → 1419
    YTH; YT521-B-like domain
    pfam07717
    Location:971 → 1066
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold
    cd17987
    Location:193 → 368
    DEXHc_YTHDC2; DEXH-box helicase domain of YTH domain containing 2
Nucleotide Protein
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