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SORCS1 sortilin related VPS10 domain containing receptor 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 693969, updated on 17-Aug-2024

Summary

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Official Symbol
SORCS1provided by VGNC
Official Full Name
sortilin related VPS10 domain containing receptor 1provided by VGNC
Primary source
VGNC:VGNC:77724
See related
Ensembl:ENSMMUG00000000433
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See SORCS1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
27
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 9 NC_041762.1 (107152929..107741317, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 9 NC_027901.1 (102028001..102619418)

Chromosome 9 - NC_041762.1Genomic Context describing neighboring genes Neighboring gene 14-3-3 protein zeta/delta pseudogene Neighboring gene uncharacterized LOC107000266 Neighboring gene uncharacterized LOC107000265 Neighboring gene uncharacterized LOC114670036

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in post-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VPS10 domain-containing receptor SorCS1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041762.1 Reference Mmul_10 Primary Assembly

    Range
    107152929..107741317 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001083180.4 → XP_001083180.1  VPS10 domain-containing receptor SorCS1 isoform X1

    See identical proteins and their annotated locations for XP_001083180.1

    UniProtKB/TrEMBL
    G7N136
    Conserved Domains (3) summary
    smart00602
    Location:196 → 793
    VPS10; VPS10 domain
    pfam00801
    Location:807 → 880
    PKD; PKD domain
    pfam15901
    Location:638 → 793
    Sortilin_C; Sortilin, neurotensin receptor 3, C-terminal

  2. XM_015148113.2 → XP_015003599.1  VPS10 domain-containing receptor SorCS1 isoform X2

    UniProtKB/TrEMBL
    G7N136
    Conserved Domains (3) summary
    smart00602
    Location:196 → 793
    VPS10; VPS10 domain
    pfam00801
    Location:807 → 880
    PKD; PKD domain
    pfam15901
    Location:638 → 793
    Sortilin_C; Sortilin, neurotensin receptor 3, C-terminal

  3. XM_001082544.3 → XP_001082544.1  VPS10 domain-containing receptor SorCS1 isoform X4

    See identical proteins and their annotated locations for XP_001082544.1

    UniProtKB/TrEMBL
    H9F8T7
    Conserved Domains (3) summary
    smart00602
    Location:196 → 793
    VPS10; VPS10 domain
    pfam00801
    Location:807 → 880
    PKD; PKD domain
    pfam15901
    Location:638 → 793
    Sortilin_C; Sortilin, neurotensin receptor 3, C-terminal

  4. XM_015148114.2 → XP_015003600.1  VPS10 domain-containing receptor SorCS1 isoform X3

    UniProtKB/TrEMBL
    F7A6D9, H9F8T7
    Related
    ENSMMUP00000000586.2, ENSMMUT00000000635.4
    Conserved Domains (3) summary
    smart00602
    Location:196 → 793
    VPS10; VPS10 domain
    pfam00801
    Location:807 → 880
    PKD; PKD domain
    pfam15901
    Location:638 → 793
    Sortilin_C; Sortilin, neurotensin receptor 3, C-terminal
Nucleotide Protein
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