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TPBG trophoblast glycoprotein [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 693944, updated on 17-Aug-2024

Summary

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Official Symbol
TPBGprovided by VGNC
Official Full Name
trophoblast glycoproteinprovided by VGNC
Primary source
VGNC:VGNC:78631
Locus tag
EGK_15113
See related
Ensembl:ENSMMUG00000063437
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See TPBG in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (90723947..90731528, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (80556480..80564965)

Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114677396 Neighboring gene uncharacterized LOC114677556 Neighboring gene single-stranded DNA-binding protein 2 pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene inhibitor of Bruton tyrosine kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trophoblast glycoprotein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001193701.2 → NP_001180630.1  trophoblast glycoprotein precursor

    See identical proteins and their annotated locations for NP_001180630.1

    Status: PROVISIONAL

    Source sequence(s)
    QNVO02000341
    UniProtKB/TrEMBL
    A0A8J8XCT0, F7CT46, G7MPT2, H9F4Q1
    Related
    ENSMMUP00000065463.1, ENSMMUT00000097982.1
    Conserved Domains (4) summary
    smart00013
    Location:61 → 90
    LRRNT; Leucine rich repeat N-terminal domain
    smart00082
    Location:294 → 345
    LRRCT; Leucine rich repeat C-terminal domain
    sd00033
    Location:73 → 95
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:93 → 154
    LRR_8; Leucine rich repeat

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041757.1 Reference Mmul_10 Primary Assembly

    Range
    90723947..90731528 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028846618.1 → XP_028702451.1  trophoblast glycoprotein isoform X1

    UniProtKB/TrEMBL
    A0A8J8XCT0, F7CT46, G7MPT2, H9F4Q1
    Related
    ENSMMUP00000080171.1, ENSMMUT00000097550.1
    Conserved Domains (4) summary
    smart00013
    Location:61 → 90
    LRRNT; Leucine rich repeat N-terminal domain
    smart00082
    Location:294 → 345
    LRRCT; Leucine rich repeat C-terminal domain
    sd00033
    Location:73 → 95
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:93 → 154
    LRR_8; Leucine rich repeat

  2. XM_028846619.1 → XP_028702452.1  trophoblast glycoprotein isoform X1

    UniProtKB/TrEMBL
    A0A8J8XCT0, F7CT46, G7MPT2, H9F4Q1
    Conserved Domains (4) summary
    smart00013
    Location:61 → 90
    LRRNT; Leucine rich repeat N-terminal domain
    smart00082
    Location:294 → 345
    LRRCT; Leucine rich repeat C-terminal domain
    sd00033
    Location:73 → 95
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:93 → 154
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version

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