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TNFSF13B TNF superfamily member 13b [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 693917, updated on 17-Aug-2024

Summary

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Official Symbol
TNFSF13Bprovided by VGNC
Official Full Name
TNF superfamily member 13bprovided by VGNC
Primary source
VGNC:VGNC:78594
Locus tag
EGK_09455
See related
Ensembl:ENSMMUG00000008040
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Also known as
TNLG7A
Orthologs
human mouse all
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Genomic context

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See TNFSF13B in Genome Data Viewer
Location:
chromosome: 17
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 17 NC_041770.1 (89805960..89845887)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 17 NC_027909.1 (89995622..90035227)

Chromosome 17 - NC_041770.1Genomic Context describing neighboring genes Neighboring gene NALCN channel auxiliary factor 1 Neighboring gene uncharacterized LOC114673472 Neighboring gene abhydrolase domain containing 13 Neighboring gene DNA ligase 4 Neighboring gene myosin XVI Neighboring gene uncharacterized LOC106994389

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomic analysis of eutherian tumor necrosis factor ligand genes. Premzl M. Immunogenetics, 2016 Feb. PMID 26646413
  2. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  3. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables receptor ligand activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor ligand superfamily member 13B
Names
TNF- and APOL-related leukocyte expressed ligand 1
tumor necrosis factor (ligand) superfamily, member 13b
tumor necrosis factor ligand 7A
tumor necrosis factor superfamily member 13b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041770.1 Reference Mmul_10 Primary Assembly

    Range
    89805960..89845887
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001082119.4 → XP_001082119.1  tumor necrosis factor ligand superfamily member 13B isoform X2

    UniProtKB/TrEMBL
    A0A5F7ZII6
    Related
    ENSMMUP00000064452.1, ENSMMUT00000085939.1
    Conserved Domains (1) summary
    cd00184
    Location:135 → 263
    TNF; Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal ...

  2. XM_001082247.4 → XP_001082247.1  tumor necrosis factor ligand superfamily member 13B isoform X1

    See identical proteins and their annotated locations for XP_001082247.1

    UniProtKB/TrEMBL
    A0A8J8XB87, F7H548, F7HHH0, G7NJL7
    Related
    ENSMMUP00000036043.3, ENSMMUT00000043029.3
    Conserved Domains (1) summary
    cd00184
    Location:146 → 282
    TNF; Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal ...
Nucleotide Protein
Heading Accession and Version

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