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Fam236c family with sequence similarity 236, member C [ Mus musculus (house mouse) ]

Gene ID: 69388, updated on 2-Nov-2024

Summary

Official Symbol
Fam236cprovided by MGI
Official Full Name
family with sequence similarity 236, member Cprovided by MGI
Primary source
MGI:MGI:1916638
See related
Ensembl:ENSMUSG00000109745 AllianceGenome:MGI:1916638
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700018G05Rik
Summary
Orthologous to human FAM236A (family with sequence similarity 236 member A) and FAM236B (family with sequence similarity 236 member B). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 23.5) and genital fat pad adult (RPKM 5.9) See more
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Genomic context

See Fam236c in Genome Data Viewer
Location:
X; X D
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (101971978..101972713)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (102928372..102929107)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_47679 Neighboring gene predicted pseudogene 9133 Neighboring gene DMRT-like family C1a Neighboring gene family with sequence similarity 236, member E Neighboring gene predicted gene 5126 Neighboring gene STARR-seq mESC enhancer starr_47680 Neighboring gene nicotinamide phosphoribosyltransferase pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045422.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK006087, BX638054
    Related
    ENSMUST00000211116.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    101971978..101972713
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)