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IRX1 iroquois homeobox 1 [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 693825, updated on 17-Aug-2024

Summary

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Official Symbol
IRX1provided by VGNC
Official Full Name
iroquois homeobox 1provided by VGNC
Primary source
VGNC:VGNC:73591
See related
Ensembl:ENSMMUG00000002613
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See IRX1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 6 NC_041759.1 (3541464..3547046)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 6 NC_027898.1 (3464269..3469829)

Chromosome 6 - NC_041759.1Genomic Context describing neighboring genes Neighboring gene 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial pseudogene Neighboring gene uncharacterized LOC114678733 Neighboring gene uncharacterized LOC106998639 Neighboring gene uncharacterized LOC106998640 Neighboring gene uncharacterized LOC114678734

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
iroquois-class homeodomain protein IRX-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041759.1 Reference Mmul_10 Primary Assembly

    Range
    3541464..3547046
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001082149.4 → XP_001082149.1  iroquois-class homeodomain protein IRX-1

    See identical proteins and their annotated locations for XP_001082149.1

    UniProtKB/TrEMBL
    A0A5F7ZE04, A0A5F7ZLF9
    Related
    ENSMMUP00000063817.1, ENSMMUT00000084142.1
    Conserved Domains (3) summary
    smart00548
    Location:309 → 326
    IRO; Motif in Iroquois-class homeodomain proteins (only). Unknown function
    pfam05920
    Location:145 → 184
    Homeobox_KN; Homeobox KN domain
    cl01319
    Location:188 → 247
    HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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