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SEPSECS Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 693433, updated on 17-Aug-2024

Summary

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Official Symbol
SEPSECSprovided by VGNC
Official Full Name
Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthaseprovided by VGNC
Primary source
VGNC:VGNC:100268
Locus tag
EGK_15619
See related
Ensembl:ENSMMUG00000019784
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Also known as
SLA/LP
Orthologs
human mouse all
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Genomic context

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See SEPSECS in Genome Data Viewer
Location:
chromosome: 5
Exon count:
13
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (24072436..24112666, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (24515610..24556162, complement)

Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat LGI family member 2 Neighboring gene uncharacterized LOC114678138 Neighboring gene uncharacterized LOC114678265 Neighboring gene U7 small nuclear RNA Neighboring gene U2 spliceosomal RNA Neighboring gene phosphatidylinositol 4-kinase type 2 beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-phosphoseryl-tRNA(Sec) selenium transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in conversion of seryl-tRNAsec to selenocys-tRNAsec IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in selenocysteine incorporation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
O-phosphoseryl-tRNA(Sec) selenium transferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041758.1 Reference Mmul_10 Primary Assembly

    Range
    24072436..24112666 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001082141.4 → XP_001082141.3  O-phosphoseryl-tRNA(Sec) selenium transferase isoform X1

    UniProtKB/TrEMBL
    A0A8J8YKH8, F7G5F9, G7MSN9, H9F756
    Related
    ENSMMUP00000026017.2, ENSMMUT00000027810.4
    Conserved Domains (1) summary
    TIGR03531
    Location:12 → 458
    selenium_SpcS; O-phosphoseryl-tRNA(Sec) selenium transferase

  2. XM_028848375.1 → XP_028704208.1  O-phosphoseryl-tRNA(Sec) selenium transferase isoform X2

    UniProtKB/TrEMBL
    H9F756
    Conserved Domains (1) summary
    TIGR03531
    Location:1 → 398
    selenium_SpcS; O-phosphoseryl-tRNA(Sec) selenium transferase

  3. XM_028848374.1 → XP_028704207.1  O-phosphoseryl-tRNA(Sec) selenium transferase isoform X2

    UniProtKB/TrEMBL
    H9F756
    Conserved Domains (1) summary
    TIGR03531
    Location:1 → 398
    selenium_SpcS; O-phosphoseryl-tRNA(Sec) selenium transferase

RNA

  1. XR_001444708.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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