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pold3 polymerase (DNA-directed), delta 3, accessory subunit [ Danio rerio (zebrafish) ]

Gene ID: 692256, updated on 9-Dec-2024

Summary

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Official Symbol
pold3provided by ZNC
Official Full Name
polymerase (DNA-directed), delta 3, accessory subunitprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060512-59
See related
Ensembl:ENSDARG00000076169 AllianceGenome:ZFIN:ZDB-GENE-060512-59
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:136471
Summary
Predicted to contribute to DNA-directed DNA polymerase activity. Predicted to be involved in DNA strand elongation involved in DNA replication; DNA synthesis involved in UV-damage excision repair; and nucleotide-excision repair, DNA gap filling. Predicted to act upstream of or within DNA replication. Predicted to be located in nucleus. Predicted to be part of delta DNA polymerase complex. Orthologous to human POLD3 (DNA polymerase delta 3, accessory subunit). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
human mouse all
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Genomic context

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See pold3 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (21743680..21754630)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (21707044..21717994)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene odorant receptor, family 61, subfamily C, member 3 Neighboring gene defensin, beta-like 1 Neighboring gene chordin-like 2 Neighboring gene X-ray radiation resistance associated 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Ovarian transcriptomic signatures of zebrafish females resistant to different environmental perturbations. Valdivieso A, et al. J Exp Zool B Mol Dev Evol, 2019 May. PMID 30945804
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within DNA replication IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of delta DNA polymerase complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
DNA polymerase delta subunit 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001042769.2 → NP_001036234.1  DNA polymerase delta subunit 3

    Status: PROVISIONAL

    Source sequence(s)
    BC107842, CK706761
    UniProtKB/TrEMBL
    A0A8M1N920, Q3B731
    Related
    ENSDARP00000092475.4, ENSDART00000101700.5
    Conserved Domains (1) summary
    pfam09507
    Location:18 → 457
    CDC27; DNA polymerase subunit Cdc27

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    21743680..21754630
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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