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SNORD13 small nucleolar RNA, C/D box 13 [ Homo sapiens (human) ]

Gene ID: 692084, updated on 9-Dec-2024

Summary

Official Symbol
SNORD13provided by HGNC
Official Full Name
small nucleolar RNA, C/D box 13provided by HGNC
Primary source
HGNC:HGNC:32711
See related
Ensembl:ENSG00000239039 MIM:616664; AllianceGenome:HGNC:32711
Gene type
snoRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
U13; RNU13; SNORD13A
Summary
Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

See SNORD13 in Genome Data Viewer
Location:
8p12
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (33513475..33513578)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (33784825..33784928)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (33370993..33371096)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene fucosyltransferase 10 Neighboring gene RNA binding motif protein 4 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19094 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27218 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19095 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19096 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:33341856-33342492 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:33342520-33342707 Neighboring gene MAK16 homolog Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27220 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19098 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27221 Neighboring gene thymosin beta 4 X-linked pseudogene Neighboring gene TELO2 interacting protein 2 Neighboring gene MPRA-validated peak6988 silencer Neighboring gene uncharacterized LOC124900261

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003041.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC091144
    Related
    ENST00000459299.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    33513475..33513578
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    33784825..33784928
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)