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Tmem121 transmembrane protein 121 [ Rattus norvegicus (Norway rat) ]

Gene ID: 691678, updated on 27-Nov-2024

Summary

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Official Symbol
Tmem121provided by RGD
Official Full Name
transmembrane protein 121provided by RGD
Primary source
RGD:1597216
See related
EnsemblRapid:ENSRNOG00000005174 AllianceGenome:RGD:1597216
Gene type
protein coding
RefSeq status
INFERRED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in membrane. Orthologous to human TMEM121 (transmembrane protein 121). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 46.4), Muscle (RPKM 9.9) and 6 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Tmem121 in Genome Data Viewer
Location:
6q32
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (138083239..138086848)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (132262182..132265797)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (137994675..138002897)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene cysteine rich protein 1 Neighboring gene tubulin epsilon and delta complex 1 Neighboring gene immunoglobulin heavy constant epsilon-like Neighboring gene immunoglobulin heavy constant epsilon-like Neighboring gene Ig gamma-2B chain C region-like Neighboring gene small nucleolar RNA SNORA40

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transmembrane protein 121

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001398696.1 → NP_001385625.1  transmembrane protein 121

    Status: INFERRED

    Source sequence(s)
    JAXUCZ010000006
    UniProtKB/TrEMBL
    D3ZMR5
    Related
    ENSRNOP00000109559.1, ENSRNOT00000122810.1
    Conserved Domains (1) summary
    pfam14997
    Location:73 → 267
    CECR6_TMEM121; CECR6/TMEM121 family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    138083239..138086848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006240674.5 → XP_006240736.1  transmembrane protein 121 isoform X1

    See identical proteins and their annotated locations for XP_006240736.1

    UniProtKB/TrEMBL
    D3ZMR5
    Related
    ENSRNOP00000006872.1, ENSRNOT00000006872.4
    Conserved Domains (1) summary
    pfam14997
    Location:73 → 267
    CECR6_TMEM121; CECR6/TMEM121 family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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