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Aknad1 AKNA domain containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 691416, updated on 4-Jan-2025

Summary

Official Symbol
Aknad1provided by RGD
Official Full Name
AKNA domain containing 1provided by RGD
Primary source
RGD:1583957
See related
EnsemblRapid:ENSRNOG00000028025 AllianceGenome:RGD:1583957
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human AKNAD1 (AKNA domain containing 1). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Liver (RPKM 21.6), Testes (RPKM 14.9) and 2 other tissues See more
Orthologs
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Genomic context

See Aknad1 in Genome Data Viewer
Location:
2q34
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (199076864..199120402)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (196385149..196432319)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (211541800..211585332)

Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene chloride channel CLIC-like 1 Neighboring gene G-protein signaling modulator 2 Neighboring gene uncharacterized LOC102547393 Neighboring gene syntaxin binding protein 3 Neighboring gene uncharacterized LOC134485674 Neighboring gene fibronectin type III domain containing 7

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044303.2NP_001037768.2  protein AKNAD1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the protein-coding transcript.
    Source sequence(s)
    BC079051, JAXUCZ010000002
    UniProtKB/TrEMBL
    F7FFB7
    Related
    ENSRNOP00000029704.6, ENSRNOT00000033443.7
    Conserved Domains (1) summary
    pfam12443
    Location:324416
    AKNA; AT-hook-containing transcription factor

RNA

  1. NR_073134.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate acceptor splice site at an internal exon and lacks several exons at the 3' end compared to variant 1. It is represented as non-coding because a significant portion of the longest open reading frame (ORF) is in a different frame compared to variant 1, and there is no support for the predicted protein encoded by this ORF.
    Source sequence(s)
    BC079051

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086020.1 Reference GRCr8

    Range
    199076864..199120402
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063282594.1XP_063138664.1  protein AKNAD1 isoform X1

    UniProtKB/TrEMBL
    F7FFB7
  2. XM_063282593.1XP_063138663.1  protein AKNAD1 isoform X1

    UniProtKB/TrEMBL
    F7FFB7
  3. XM_039103167.2XP_038959095.1  protein AKNAD1 isoform X2

    UniProtKB/TrEMBL
    A6HV28
    Conserved Domains (1) summary
    pfam12443
    Location:340432
    AKNA; AT-hook-containing transcription factor
  4. XM_063282595.1XP_063138665.1  protein AKNAD1 isoform X1

    UniProtKB/TrEMBL
    F7FFB7

RNA

  1. XR_005500370.2 RNA Sequence