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Zfp933 zinc finger protein 933 [ Rattus norvegicus (Norway rat) ]

Gene ID: 691280, updated on 27-Nov-2024

Summary

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Official Symbol
Zfp933provided by RGD
Official Full Name
zinc finger protein 933provided by RGD
Primary source
RGD:1586231
See related
EnsemblRapid:ENSRNOG00000056374 AllianceGenome:RGD:1586231
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable metal ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Adrenal (RPKM 120.7), Brain (RPKM 52.0) and 9 other tissues See more
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Genomic context

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See Zfp933 in Genome Data Viewer
Location:
5q36
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (163548058..163570132, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (158264875..158285036, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (164644438..164665455, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene reduced expression 2 like 3 Neighboring gene migration and invasion inhibitory protein Neighboring gene mitofusin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • AC097784.1

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
similar to Zinc finger protein 180 (HHZ168)
Names
zinc finger protein 431

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001409281.1 → NP_001396210.1  similar to Zinc finger protein 180 (HHZ168)

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000005
    UniProtKB/TrEMBL
    A0A0G2K4R3
    Related
    ENSRNOP00000073141.2, ENSRNOT00000090811.3

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    163548058..163570132 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017593873.3 → XP_017449362.1  similar to Zinc finger protein 180 (HHZ168) isoform X2

    UniProtKB/TrEMBL
    A6IU26
    Conserved Domains (2) summary
    smart00349
    Location:4 → 45
    KRAB; krueppel associated box
    pfam01352
    Location:4 → 40
    KRAB; KRAB box

  2. XM_017593872.3 → XP_017449361.1  similar to Zinc finger protein 180 (HHZ168) isoform X1

    UniProtKB/TrEMBL
    A6IU26
    Conserved Domains (2) summary
    smart00349
    Location:4 → 45
    KRAB; krueppel associated box
    pfam01352
    Location:4 → 40
    KRAB; KRAB box
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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