U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

2610008E11Rikl RIKEN cDNA 2610008E11 gene like [ Rattus norvegicus (Norway rat) ]

Gene ID: 691170, updated on 4-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
2610008E11Riklprovided by RGD
Official Full Name
RIKEN cDNA 2610008E11 gene likeprovided by RGD
Primary source
RGD:1587418
See related
EnsemblRapid:ENSRNOG00000022871 AllianceGenome:RGD:1587418
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Lung (RPKM 115.1), Thymus (RPKM 110.8) and 9 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See 2610008E11Rikl in Genome Data Viewer
Location:
7q11
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (11080766..11102013)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (10430177..10451419)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (13318520..13339755)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene vomeronasal 2 receptor, 53 Neighboring gene small nucleolar RNA SNORA26 Neighboring gene olfactory receptor family 7 subfamily A member 44 Neighboring gene olfactory receptor family 7 subfamily A member 41

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
zinc finger protein 883-like
Names
zinc finger protein 39-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    11080766..11102013
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063264397.1 → XP_063120467.1  zinc finger protein 883-like isoform X2

  2. XM_001077082.8 → XP_001077082.3  zinc finger protein 883-like isoform X1

    See identical proteins and their annotated locations for XP_001077082.3

    UniProtKB/TrEMBL
    D3ZKP7
    Related
    ENSRNOP00000034574.8, ENSRNOT00000034545.8
    Conserved Domains (5) summary
    smart00349
    Location:10 → 69
    KRAB; krueppel associated box
    COG5048
    Location:243 → 617
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:529 → 549
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:10 → 49
    KRAB; KRAB box
    pfam13465
    Location:485 → 508
    zf-H2C2_2; Zinc-finger double domain

  3. XM_039080027.2 → XP_038935955.1  zinc finger protein 883-like isoform X3

    Conserved Domains (2) summary
    COG5048
    Location:103 → 477
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:389 → 409
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases
Research Materials
Tools