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C8h19orf38 similar to human chromosome 19 open reading frame 38 [ Rattus norvegicus (Norway rat) ]

Gene ID: 691141, updated on 9-Dec-2024

Summary

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Official Symbol
C8h19orf38provided by RGD
Official Full Name
similar to human chromosome 19 open reading frame 38provided by RGD
Primary source
RGD:1587445
See related
EnsemblRapid:ENSRNOG00000033256 AllianceGenome:RGD:1587445
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in membrane. Orthologous to human C19orf38 (chromosome 19 open reading frame 38). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Spleen (RPKM 78.9), Lung (RPKM 33.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See C8h19orf38 in Genome Data Viewer
Location:
8q13
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (28337629..28371806)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (20061494..20095705)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (22557769..22576163)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene queuine tRNA-ribosyltransferase catalytic subunit 1 Neighboring gene dynamin 2 Neighboring gene uncharacterized LOC134480146 Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class X, pseudogene 1 Neighboring gene transmembrane p24 trafficking protein 1 Neighboring gene coactivator-associated arginine methyltransferase 1 Neighboring gene Yip1 domain family, member 2 Neighboring gene translocase of inner mitochondrial membrane 29

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein HIDE1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109624.1 → NP_001103094.1  protein HIDE1

    See identical proteins and their annotated locations for NP_001103094.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473993
    UniProtKB/TrEMBL
    A6JNS9, D3ZMI7
    Related
    ENSRNOP00000041436.2, ENSRNOT00000041091.4
    Conserved Domains (1) summary
    pfam17737
    Location:36 → 130
    Ig_C19orf38; Ig domain in C19orf38 (HIDE1)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    28337629..28371806
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039082180.2 → XP_038938108.1  protein HIDE1 isoform X3

    UniProtKB/TrEMBL
    A0A8I5ZRB8
    Related
    ENSRNOP00000081290.1, ENSRNOT00000099602.2
    Conserved Domains (1) summary
    pfam17737
    Location:36 → 130
    Ig_C19orf38; Ig domain in C19orf38 (HIDE1)

  2. XM_063266176.1 → XP_063122246.1  protein HIDE1 isoform X1

    UniProtKB/TrEMBL
    A6JNS9, D3ZMI7

  3. XM_063266178.1 → XP_063122248.1  protein HIDE1 isoform X5

  4. XM_039082182.2 → XP_038938110.1  protein HIDE1 isoform X4

    Conserved Domains (1) summary
    pfam17737
    Location:36 → 130
    Ig_C19orf38; Ig domain in C19orf38 (HIDE1)

  5. XM_039082179.2 → XP_038938107.1  protein HIDE1 isoform X1

    UniProtKB/TrEMBL
    A6JNS9, D3ZMI7
    Conserved Domains (1) summary
    pfam17737
    Location:36 → 130
    Ig_C19orf38; Ig domain in C19orf38 (HIDE1)

  6. XM_039082183.2 → XP_038938111.1  protein HIDE1 isoform X5

  7. XM_063266177.1 → XP_063122247.1  protein HIDE1 isoform X2

  8. XM_063266179.1 → XP_063122249.1  protein HIDE1 isoform X6

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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