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Hmgb1l3 high mobility group box 1 like 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 690521, updated on 14-Nov-2024

Summary

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Official Symbol
Hmgb1l3provided by RGD
Official Full Name
high mobility group box 1 like 3provided by RGD
Primary source
RGD:1594733
See related
EnsemblRapid:ENSRNOG00000086619 AllianceGenome:RGD:1594733
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be involved in several processes, including DNA metabolic process; autophagy; and innate immune response. Predicted to be located in several cellular components, including chromosome; endoplasmic reticulum-Golgi intermediate compartment; and nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Hmgb1l3 in Genome Data Viewer
Location:
3q41
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (163238867..163253134)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (142792113..142792852)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (149790599..149791497)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene CDK5 regulatory subunit associated protein 1 Neighboring gene mortality factor 4 like 2, pseudogene 1 Neighboring gene ribosomal protein lateral stalk subunit P1 like 3 Neighboring gene vomeromodulin-like Neighboring gene uncharacterized LOC120101761 Neighboring gene syntrophin, alpha 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
high mobility group protein B1-like; similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    163238867..163253134
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063285097.1 → XP_063141167.1  high mobility group protein B1-like

    Related
    ENSRNOP00000106927.1, ENSRNOT00000167416.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials