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Bpifb5 BPI fold containing family B, member 5 [ Rattus norvegicus (Norway rat) ]

Gene ID: 690479, updated on 9-Dec-2024

Summary

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Official Symbol
Bpifb5provided by RGD
Official Full Name
BPI fold containing family B, member 5provided by RGD
Primary source
RGD:1596031
See related
EnsemblRapid:ENSRNOG00000025238 AllianceGenome:RGD:1596031
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable lipid binding activity. [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Uterus (RPKM 5.5), Thymus (RPKM 2.8) and 3 other tissues See more
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Genomic context

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See Bpifb5 in Genome Data Viewer
Location:
3q41
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (163169860..163188492)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (142706316..142728330)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (149706004..149724469)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene BPI fold containing family A, member 5 Neighboring gene BPI fold containing family B, member 1 Neighboring gene CDK5 regulatory subunit associated protein 1 Neighboring gene mortality factor 4 like 2, pseudogene 1 Neighboring gene ribosomal protein lateral stalk subunit P1 like 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein Bpifb5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    163169860..163188492
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001074561.6 → XP_001074561.2  uncharacterized protein Bpifb5

    See identical proteins and their annotated locations for XP_001074561.2

    UniProtKB/TrEMBL
    D3ZTZ5
    Related
    ENSRNOP00000032123.5, ENSRNOT00000034798.7
    Conserved Domains (1) summary
    cl00188
    Location:176 → 255
    BPI; BPI/LBP/CETP domain; Bactericidal permeability-increasing protein (BPI) / Lipopolysaccharide-binding protein (LBP) / Cholesteryl ester transfer protein (CETP) domain; binds to and neutralizes lipopolysaccharides from the outer membrane of Gram-negative ...
Nucleotide Protein Strain
Heading Accession and Version

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