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Lrrn4cl LRRN4 C-terminal like [ Rattus norvegicus (Norway rat) ]

Gene ID: 690329, updated on 2-Nov-2024

Summary

Official Symbol
Lrrn4clprovided by RGD
Official Full Name
LRRN4 C-terminal likeprovided by RGD
Primary source
RGD:1597359
See related
EnsemblRapid:ENSRNOG00000019666 AllianceGenome:RGD:1597359
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human LRRN4CL (LRRN4 C-terminal like). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Muscle (RPKM 20.8), Lung (RPKM 6.2) and 8 other tissues See more
Orthologs
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Genomic context

See Lrrn4cl in Genome Data Viewer
Location:
1q43
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (215172689..215192627)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (205743580..205759879)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (225046248..225050963)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein U-like 2 Neighboring gene BSCL2 lipid droplet biogenesis associated, seipin Neighboring gene G protein subunit gamma 3 Neighboring gene UBX domain protein 1 Neighboring gene ubiquinol-cytochrome c reductase complex assembly factor 3

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
LRRN4 C-terminal-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109579.1NP_001103049.1  LRRN4 C-terminal-like protein precursor

    See identical proteins and their annotated locations for NP_001103049.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473953
    UniProtKB/TrEMBL
    A6HZV8
    Conserved Domains (1) summary
    cd00063
    Location:83162
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    215172689..215192627
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039091425.2XP_038947353.1  LRRN4 C-terminal-like protein isoform X4

    Conserved Domains (1) summary
    cd00063
    Location:115193
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
  2. XM_039091421.2XP_038947349.1  LRRN4 C-terminal-like protein isoform X2

    Related
    ENSRNOP00000107127.1, ENSRNOT00000125698.1
    Conserved Domains (1) summary
    cd00063
    Location:115192
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
  3. XM_006231002.4XP_006231064.1  LRRN4 C-terminal-like protein isoform X1

    UniProtKB/TrEMBL
    D4A8U4
    Conserved Domains (1) summary
    cd00063
    Location:115194
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
  4. XM_039091424.2XP_038947352.1  LRRN4 C-terminal-like protein isoform X3

    UniProtKB/TrEMBL
    A6HZV8
    Conserved Domains (1) summary
    cd00063
    Location:83162
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...