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Pdcl1-ps1 phosducin-like 1, pseudogene 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 690155, updated on 17-Aug-2024

Summary

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Official Symbol
Pdcl1-ps1provided by RGD
Official Full Name
phosducin-like 1, pseudogene 1provided by RGD
Primary source
RGD:1584015
See related
AllianceGenome:RGD:1584015
Gene type
pseudo
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Thymus (RPKM 124.0), Lung (RPKM 120.8) and 9 other tissues See more
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Genomic context

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See Pdcl1-ps1 in Genome Data Viewer
Location:
3q11
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (41263570..41331087, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (20872691..20881151, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (21373682..21382128, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene olfactory receptor pseudogene 433 Neighboring gene olfactory receptor family 5 subfamily C member 1 Neighboring gene NME/NM23 nucleoside diphosphate kinase 2, pseudogene 6 Neighboring gene uncharacterized LOC134486086 Neighboring gene ribosome biogenesis regulator 1 homolog, pseudogene 10 Neighboring gene protein tyrosine phosphatase type IVA 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    41263570..41331087 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_010064769.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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