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Tomm20l translocase of outer mitochondrial membrane 20 like [ Rattus norvegicus (Norway rat) ]

Gene ID: 689996, updated on 9-Dec-2024

Summary

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Symbol
Tomm20lprovided by RGD
Full Name
translocase of outer mitochondrial membrane 20 likeprovided by RGD
Primary source
RGD:1586305
See related
AllianceGenome:RGD:1586305
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Tomm20l1
Summary
Predicted to be involved in intracellular protein transport. Orthologous to human TOMM20L (translocase of outer mitochondrial membrane 20 like). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Testes (RPKM 118.0), Thymus (RPKM 8.9) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Tomm20l in Genome Data Viewer
Location:
6q24
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (95335681..95346116)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (89594016..89612070)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (93538377..93549533)

Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene transfer RNA lysine (anticodon CUU) 9 Neighboring gene proteasome 20S subunit alpha 3 Neighboring gene AT-rich interaction domain 4A Neighboring gene KIAA0586 homolog Neighboring gene translocase of inner mitochondrial membrane 9 Neighboring gene dishevelled-binding antagonist of beta-catenin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • AC128303.1

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables mitochondrion targeting sequence binding IBA
Inferred from Biological aspect of Ancestor
more info
  
contributes_to protein transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
involved_in protein import into mitochondrial matrix IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in tRNA import into mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of mitochondrial outer membrane translocase complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
TOMM20-like protein 1
Names
translocase of outer mitochondrial membrane 20 homolog-like
translocase of outer mitochondrial membrane 20 like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001432176.1 → NP_001419105.1  TOMM20-like protein 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000006
    UniProtKB/TrEMBL
    A0A0G2JU30, A6HC12

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086024.1 Reference GRCr8

    Range
    95335681..95346116
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001072851.7 → XP_001072851.3  TOMM20-like protein 1 isoform X1

    Conserved Domains (1) summary
    pfam02064
    Location:82 → 184
    MAS20; MAS20 protein import receptor

  2. XM_039113236.2 → XP_038969164.1  TOMM20-like protein 1 isoform X2

    Conserved Domains (1) summary
    cl03428
    Location:82 → 119
    MAS20; MAS20 protein import receptor
Nucleotide Protein Strain
Heading Accession and Version

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