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Tmem213 transmembrane protein 213 [ Rattus norvegicus (Norway rat) ]

Gene ID: 689748, updated on 27-Nov-2024

Summary

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Official Symbol
Tmem213provided by RGD
Official Full Name
transmembrane protein 213provided by RGD
Primary source
RGD:1588740
See related
EnsemblRapid:ENSRNOG00000085221 AllianceGenome:RGD:1588740
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human TMEM213 (transmembrane protein 213). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward (RPKM 296.5) See more
Orthologs
human mouse all
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Genomic context

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See Tmem213 in Genome Data Viewer
Location:
4q23
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (67792010..67798039)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (66825040..66831070)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (65800410..65823205)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene high-mobility group box 1, pseudogene 18 Neighboring gene tripartite motif-containing 24 Neighboring gene SVOP like Neighboring gene ATPase H+ transporting V0 subunit a4 Neighboring gene uncharacterized LOC134486756 Neighboring gene KIAA1549 homolog Neighboring gene ZC3HAV1 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
transmembrane protein 213

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001399337.1 → NP_001386266.1  transmembrane protein 213

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000004
    Related
    ENSRNOP00000109146.1, ENSRNOT00000131289.1
    Conserved Domains (1) summary
    pfam15192
    Location:50 → 127
    TMEM213; TMEM213 family

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    67792010..67798039
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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