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LOC689316 hypothetical protein LOC689316 [ Rattus norvegicus (Norway rat) ]

Gene ID: 689316, updated on 17-Aug-2024

Summary

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Symbol
LOC689316provided by RGD
Full Name
hypothetical protein LOC689316provided by RGD
Primary source
RGD:1593548
See related
AllianceGenome:RGD:1593548
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Testes (RPKM 26.3), Adrenal (RPKM 17.1) and 9 other tissues See more
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Genomic context

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See LOC689316 in Genome Data Viewer
Location:
17p14
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (14508913..14572854, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (14357249..14421194, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (15052385..15100186)

Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene spermatogenesis-associated protein 31E1-like Neighboring gene SPATA31 subfamily A member 5 like 1 Neighboring gene F-box and WD-40 domain protein 17 Neighboring gene NUT family member 2 Neighboring gene uncharacterized LOC134482691 Neighboring gene SPATA31 subfamily C member 2 like 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_144438.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    JAXUCZ010000017

  2. NR_144439.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 3' exon, resulting in a shorter transcript compared to variant 1.
    Source sequence(s)
    JAXUCZ010000017

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086035.1 Reference GRCr8

    Range
    14508913..14572854 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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