U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Ldlrad1 low density lipoprotein receptor class A domain containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 689088, updated on 4-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
Ldlrad1provided by RGD
Official Full Name
low density lipoprotein receptor class A domain containing 1provided by RGD
Primary source
RGD:1597398
See related
EnsemblRapid:ENSRNOG00000037795 AllianceGenome:RGD:1597398
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to be located in membrane. Orthologous to human LDLRAD1 (low density lipoprotein receptor class A domain containing 1). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Lung (RPKM 61.7), Thymus (RPKM 24.1) and 9 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Ldlrad1 in Genome Data Viewer
Location:
5q34
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (127212581..127229753)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (121984245..122000941)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (126812168..126821437)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene transcription elongation factor A N-terminal and central domain containing 2 Neighboring gene transfer RNA alanine (anticodon AGC) 38 Neighboring gene transmembrane protein 59 Neighboring gene leucine rich repeat containing 42 Neighboring gene intraflagellar transport 25 Neighboring gene iodothyronine deiodinase 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
low-density lipoprotein receptor class A domain-containing protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    127212581..127229753
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063261321.1 → XP_063117391.1  low-density lipoprotein receptor class A domain-containing protein 1 isoform X2

  2. XM_039111136.2 → XP_038967064.1  low-density lipoprotein receptor class A domain-containing protein 1 isoform X1

  3. XM_063261322.1 → XP_063117392.1  low-density lipoprotein receptor class A domain-containing protein 1 isoform X5

  4. XM_063261323.1 → XP_063117393.1  low-density lipoprotein receptor class A domain-containing protein 1 isoform X8

  5. XM_039111143.2 → XP_038967071.1  low-density lipoprotein receptor class A domain-containing protein 1 isoform X4

  6. XM_006238557.4 → XP_006238619.1  low-density lipoprotein receptor class A domain-containing protein 1 isoform X3

    See identical proteins and their annotated locations for XP_006238619.1

    UniProtKB/TrEMBL
    D4A460

  7. XM_039111145.2 → XP_038967073.1  low-density lipoprotein receptor class A domain-containing protein 1 isoform X7

  8. XM_039111144.2 → XP_038967072.1  low-density lipoprotein receptor class A domain-containing protein 1 isoform X6

  9. XM_039111141.2 → XP_038967069.1  low-density lipoprotein receptor class A domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    D4A460
    Related
    ENSRNOP00000054184.4, ENSRNOT00000057372.6
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools